plink-custom-r | Setup and starter script for the PLINK R plugin

by kenhanscombe R Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | plink-custom-r Summary

plink-custom-r is a R library. plink-custom-r has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Setup and starter script for the PLINK R plugin.

Support

Quality

Security

License

Reuse

Support

plink-custom-r has a low active ecosystem.

It has 6 star(s) with 2 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

plink-custom-r has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of plink-custom-r is current.

Quality

plink-custom-r has no bugs reported.

Security

plink-custom-r has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

plink-custom-r does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

plink-custom-r releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of plink-custom-r

Get all kandi verified functions for this library.

plink-custom-r Key Features

No Key Features are available at this moment for plink-custom-r.

plink-custom-r Examples and Code Snippets

No Code Snippets are available at this moment for plink-custom-r.

Community Discussions

No Community Discussions are available at this moment for plink-custom-r.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install plink-custom-r

First, you will need to install the development version of PLINK, and the latest version of R. Open R and install relevant packages. Rserve is required; broom and a couple of tidyverse packages are needed for the specific example below. Make a note of the Rserve installation location printed by install.packages. You will need to point to it later. To copy the R script, clone this repository.

Support

For a sample of size n, genotyped at l genetic variants, including c covariates, all genotypes, phenotypes, covariates and cluster membership are accessible within the custom R script as:. PHENO A vector of phenotypes of length n. GENO An n x l matrix of genotypes. CLUSTER A vector of cluster membership codes of length n. COVAR An n x c matrix of covariates. The R script defines a function Rplink, with obligatory header, and return value, as follows,.

Find more information at: