complex-upset | creating complex UpSet plots with ggplot2 geoms | Data Visualization library

by krassowski R Version: v1.3.5 License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | complex-upset Summary

complex-upset is a R library typically used in Analytics, Data Visualization applications. complex-upset has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

A library for creating complex UpSet plots with ggplot2 geoms

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Quality

Security

License

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Support

complex-upset has a low active ecosystem.

It has 345 star(s) with 23 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 42 open issues and 110 have been closed. On average issues are closed in 52 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of complex-upset is v1.3.5

Quality

complex-upset has 0 bugs and 0 code smells.

Security

complex-upset has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

complex-upset code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

complex-upset is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

complex-upset releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

It has 90 lines of code, 0 functions and 2 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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complex-upset Key Features

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complex-upset Examples and Code Snippets

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Community Discussions

Trending Discussions on complex-upset

Memory management in R ComplexUpset Package

Manual coloring of dots by set color in Complex Upset

QUESTION

Memory management in R ComplexUpset Package

Asked 2021-Nov-24 at 13:47

I'm trying to plot an stacked barplot inside an upset-plot using the ComplexUpset package. The plot I'd like to get looks something like this (where mpaa would be component in my example):

I have a dataframe of size 57244 by 21, where one column is ID and the other is type of recording, and other 19 columns are components from 1 to 19:

...

ANSWER

Answered 2021-Nov-24 at 13:47

Somehow, it works if you:

Tweak the min_size parameter so that the plot is not overloaded and makes a better impression
Making the first argument of ComplexUpset a sample with some data also helps, even if your sample is the whole dataset.

Source https://stackoverflow.com/questions/69974424

QUESTION

Manual coloring of dots by set color in Complex Upset

Asked 2021-Sep-22 at 15:39

I would like to create an UpSet plot using the ComplexUpset package. I would like to manually color the dots in the intersection matrix to match the sets' color.

Here's what I've attempted so far:

...

ANSWER

Answered 2021-Sep-22 at 15:37

The dots don't change color because you are passing fill (not color) to upset_query; you can keep using fill if you like but in that case you need to also change the shape of the dot so that they have area to be filled, which can be done using shape='circle filled' (there are other shapes too!).

Similarly, the scale_color_manual would not be a perfect choice in plain ggplot2, but given that it is overridden by ComplexUpset it is actually a good idea, but you will need to customize override.aes to make it display as intended.

Source https://stackoverflow.com/questions/69280909

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install complex-upset

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Support

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