intergraph | R package for converting network data objects | Data Visualization library

by mbojan R Version: v2.0-2 License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | intergraph Summary

intergraph is a R library typically used in Analytics, Data Visualization applications. intergraph has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

This is an R package implementing methods for converting network data objects between classes defined in other packages. Currently supported classes: network, igraph. See projects web page on mbojan.github.io/intergraph.

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Support

intergraph has a low active ecosystem.

It has 16 star(s) with 3 fork(s). There are 1 watchers for this library.

It had no major release in the last 12 months.

There are 10 open issues and 22 have been closed. On average issues are closed in 67 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of intergraph is v2.0-2

Quality

intergraph has no bugs reported.

Security

intergraph has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

intergraph does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

intergraph releases are available to install and integrate.

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intergraph Key Features

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intergraph Examples and Code Snippets

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Community Discussions

Trending Discussions on intergraph

How to Add Label to Simple Network Plot in R? Code Provided

Visualizing the result of dividing the network into communities

sub graph of the 10 most represented node in igraph

How to colour nodes/geom_point a gradient based on size using ggplot2 in R?

optimize R code for min() and sample() by group

Problems with igraph, statnet and GEPHI?

Inconsistency between Network object and Igraph object in R

Error in using asIgraph() function in R to convert a network object to an igraph object?

TFS 2015 : Test run is aborted in RunTest functional task

Oracle import batch files within a bat file

QUESTION

How to Add Label to Simple Network Plot in R? Code Provided

Asked 2021-Feb-04 at 17:56

I'm loading in the florentine dataset using the code below and trying to visualise the network:

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ANSWER

Answered 2021-Feb-04 at 17:56

# ?igraph.plotting
plot(marriages, vertex.label = V(marriages)$vertex.names)

Source https://stackoverflow.com/questions/66050638

QUESTION

Visualizing the result of dividing the network into communities

Asked 2020-Sep-12 at 18:40

The dataset is included the network matrix and attribute data frame. Network dataset has 3 data set itself, that I just want to work on PrinFull dataset and also just PRIN attribute data. my data is uploaded in this two link below. I added all attribute on my data set.

https://drive.google.com/file/d/1MZCdeAZF0joIQLwVeoVXmKpf7r8IJ2wq/view?usp=sharing https://drive.google.com/file/d/1I96BAUo8TjJMWCWpn_SIhp54snfZ0Bd5/view?usp=sharing I want to plot my community detection algorithm, the code is as below , but my plot is messy and not understandable. how can I plot in a better way? can anyone help me?

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ANSWER

Answered 2020-Jun-26 at 15:24

Nothing that you can do will make it easy to see 2839 nodes with 9379 links. There just isn't that much space on the screen. Nevertheless, I have some suggestions that may provide more insight than just passing the graph into plot.

First, a quick glance at your plot reveals that this graph is not composed of a single connected component.

Source https://stackoverflow.com/questions/62553280

QUESTION

sub graph of the 10 most represented node in igraph

Asked 2020-Jun-24 at 07:52

I have a data frame file like below for attribute , and also I have a matrix of network like below, I attached attribute properly to the data. but now 1- I want the most 30 authors that are most represented in term of degree, I know that I should use subgraph, but I am not sure my code is correct or not

2- I want to authors with most citation, because I want to plot them .

can someone help me?

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ANSWER

Answered 2020-Jun-24 at 07:52

Given that your example is not reproducible, the assumption is that you have an igraph object g, with a vertex attribute citations (see data below). Also, the top 10 nodes are selected instead of 30. You can easily change that.

You can simply pass in a logical vector to the induced_subgraph command, which is used to subset the nodes. You can get such a vector by combining rank, which also helps you dealing with possible ties in the rank, and <. It is a bit unclear what your preferences for ties are, I assume that if two or more observations match rank 10 then you keep both of them. The alternative would be to keep the first or the last, or to select one at random (check out ties.method for rank).

Source https://stackoverflow.com/questions/62539181

QUESTION

How to colour nodes/geom_point a gradient based on size using ggplot2 in R?

Asked 2020-Feb-21 at 10:59

I am trying to produce a plot using the ggnet2 package in R. I have created a network (net.bg)

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ANSWER

Answered 2020-Feb-21 at 10:59

The problem is, that the shape of the points is solid and geom_point uses "nodeCol" as colour for the whole point (or rather circle). If you're using shape = 21, you have the chance to change both the outline of the point (I'm using grey here and the fill - which is now correctly controlled by the scale_fill_continuous):

Source https://stackoverflow.com/questions/60311620

QUESTION

optimize R code for min() and sample() by group

Asked 2019-Aug-25 at 18:05

I generate a network with npeople(=80), ncomp(=4) components and I want each component to have density equal to dens(=0.2).

I want to optimize 2 lines of the code which take most of the time (especially if I want to have 5k people in the network).

the 2 lines are:

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ANSWER

Answered 2019-Aug-25 at 18:05

This incorporates @BenBolker and @ DavidArenburg's suggestions and also incorporates some of data.table's tools.

Non-Equi joins

The OP code loops through each group. One part of the code also uses combn and multiple joins to get the data in the right format. Using non-equi joins, we can combine all of those steps in one data.table call

Source https://stackoverflow.com/questions/57642049

QUESTION

Problems with igraph, statnet and GEPHI?

Asked 2018-Oct-05 at 14:32

I'm working with some graph models in both Gephi, Python and R. Until by chance I decided to compare the results they gave me. So I had the following problem. When calculating the betweenness centrality with Gephi and R (using igraph and statnet), the three give me different results (igraph and statnet, not very different). Since I am working a very large network, I decided to take a small network and perform the calculation by hand, the figure shown below (taked from: enter link description here )

enter image description here

Using the adjacency list:

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ANSWER

Answered 2018-Oct-05 at 14:32

You are computing two different things.

First, to make your example reproducible, here is code that all of us can use to make your example.

Source https://stackoverflow.com/questions/52657795

QUESTION

Inconsistency between Network object and Igraph object in R

Asked 2018-Aug-04 at 15:37

I am starting a descriptive network analysis using both SNA (statnet suite) and igraph in R. I was wondering which suite to use to investigate the different properties of my network, since they have slightly different features that make them not fully interchangeable.

Unfortunately, I noticed that the 2 package returns different results (for instance, the maximal clique size identified by SNA is 8, while igraph reaches 17!. I build the two objects starting from the same edge list, stored as a dataframe. I could use intergraph to reach the same conclusions, but how do I define which package created the correct network?

EDIT

I have been asked to provide reproducible example. Providing the data would be useless as I would not be able to create a meaningful subsample of them. Unfortunately, they are private data and I cannot disseminate them. Only to give an idea, below I offer the head of my data.frame containing the edgelist named in the code 'fdi.edge.2003', of class 'data.frame'

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ANSWER

Answered 2018-Aug-04 at 15:37

I realize this is coming late, and I hope you've already found an answer! Connections--a journal produced by the International Network for Social Network Analysis--had an article identifying discrepancies between various packages for the same measures. You can find it here: https://www.exeley.com/connections/doi/10.21307/connections-2017-002

I'm new to SNA, so I don't mean to presume to be an expert, but I'd use caution when trying to find the "correct" result. Indegree and outdegree are straightforward and should come out the same regardless of package. My understanding, though, is that clique, cluster, etc. are more nebulous, and the best measure will depend to a certain degree on the research question.

Take that for what it's worth, but I'd recommend ensuring the basic network structure is consistent--edges, indegree, outdegree shouldn't differ between packages--and then decide which package's approach is most relevant to your study.

Good luck!

Source https://stackoverflow.com/questions/48427295

QUESTION

Error in using asIgraph() function in R to convert a network object to an igraph object?

Asked 2018-Jun-07 at 06:10

I am currently trying to convert a network object to an igraph object. From various posts, I understand the intergraph package can do this through the asIgraph() function. I am trying to convert the classic Sampson dataset, which is found in the ergm package. When I do:

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ANSWER

Answered 2018-Jun-07 at 06:10

EDIT: See a recent post from two weeks ago on the ergm GitHub Fixed the "nominations" attribute of the sampson dataset. This was an error in the sampson dataset that has now been fixed on the GitHub version, but not yet updated to CRAN.

It's failing because the sampson dataset has an edge attribute nominations which only has 26 values even though there are 88 edges in the dataset. When intergraph tries to convert to igraph it attempts to bind the edge attributes to the edge list with asDF() and this step fails. The simple thing is to delete the edge attribute like so:

Source https://stackoverflow.com/questions/50733082

QUESTION

TFS 2015 : Test run is aborted in RunTest functional task

Asked 2017-Aug-03 at 12:56

I am using TFS 2015 to run our orderedtests. It is aborting after 1 hour.We have modified the testSettings file runtimeout value.Orderetest timeout value also.Still no use it is still failing after running 1 hour.Test Agent is not there.

As we are new to visual studio online we are not able to understand what is the issue.

Following are the log files of the tasks in the build definition.:

Deploy TestAgent log file:

2017-08-01T08:28:50.0146249Z ##[section]Starting: Deploy TestAgent on test machines 2017-08-01T08:28:50.0771279Z Preparing task execution handler. 2017-08-01T08:28:50.5302568Z Executing the powershell script: D:\agent_work_tasks\DeployVisualStudioTestAgent_52a38a6a-1517-41d7-96cc-73ee0c60d2b6\1.0.42\DeployTestAgent.ps1 2017-08-01T08:28:52.7645941Z DistributedTests: Starting to deploy and configure test agent on test machines. 2017-08-01T08:28:52.7802207Z DistributedTests: Inputs provided are: 2017-08-01T08:28:52.7802207Z DistributedTests: Username: ingrnet\spel-daily-build 2017-08-01T08:28:52.7802207Z DistributedTests: Use HTTP Port: True 2017-08-01T08:28:52.7802207Z DistributedTests: Run as process: True 2017-08-01T08:28:52.7802207Z DistributedTests: Login Automatically: True 2017-08-01T08:28:52.7802207Z DistributedTests: Disable Screen saver: True 2017-08-01T08:28:52.7802207Z DistributedTests: Agent would be downloaded from https://go.microsoft.com/fwlink/?LinkId=615472 2017-08-01T08:28:52.7802207Z DistributedTests: Update test agent: False 2017-08-01T08:28:52.7802207Z DistributedTests: Run test agent as DataCollection only : False 2017-08-01T08:28:52.7802207Z DistributedTests: Path to script that installs test agent on remote machine: D:\agent_work_tasks\DeployVisualStudioTestAgent_52a38a6a-1517-41d7-96cc-73ee0c60d2b6\1.0.42\TestAgentInstall.ps1 2017-08-01T08:28:52.7802207Z DistributedTests: Path to script that configures test agent on remote machine: D:\agent_work_tasks\DeployVisualStudioTestAgent_52a38a6a-1517-41d7-96cc-73ee0c60d2b6\1.0.42\TestAgentConfiguration.ps1 2017-08-01T08:28:52.7802207Z DistributedTests: Path to script that downloads test agent on azure remote machines : D:\agent_work_tasks\DeployVisualStudioTestAgent_52a38a6a-1517-41d7-96cc-73ee0c60d2b6\1.0.42\DownloadTestAgent.ps1 2017-08-01T08:28:52.7802207Z DistributedTests: Path to script that checks if test agent is installed on remote machine: D:\agent_work_tasks\DeployVisualStudioTestAgent_52a38a6a-1517-41d7-96cc-73ee0c60d2b6\1.0.42\CheckTestAgentInstallation.ps1 2017-08-01T08:28:52.7802207Z DistributedTests: Path to script that checks if test agent is already running on remote machine: D:\agent_work_tasks\DeployVisualStudioTestAgent_52a38a6a-1517-41d7-96cc-73ee0c60d2b6\1.0.42\VerifyTestMachinesAreInUse.ps1 2017-08-01T08:28:52.7802207Z DistributedTests: Path to script that helps to download and configure test agent : 2017-08-01T08:28:52.8583806Z DistributedTests: Task 'PopulatingMachinesPresentState' on machine 'ISRVEL2018YS1.ingrnet.com:5985' is being run 2017-08-01T08:29:15.9362386Z DistributedTests: Task 'PopulatingMachinesPresentState' on machine 'ISRVEL2018YS1.ingrnet.com:5985' completed. 2017-08-01T08:29:15.9518654Z ##[warning]DistributedTests: You may be using machine 'ISRVEL2018YS1.ingrnet.com:5985' across one or more concurrent builds. This is currently not supported. Use an unique machine per build definition and ensure there are no concurrent builds In Progress from any given build definition using a machine. 2017-08-01T08:29:15.9518654Z DistributedTests: Update test agent is disabled. Skipping test agent updates. 2017-08-01T08:29:15.9518654Z DistributedTests: Task 'ConfigureTestAgent' on machine 'ISRVEL2018YS1.ingrnet.com:5985' is being run 2017-08-01T08:29:40.3266525Z DistributedTests: Task 'ConfigureTestAgent' on machine 'ISRVEL2018YS1.ingrnet.com:5985' completed. 2017-08-01T08:29:40.3266525Z DistributedTests: Testagents are configured and ready to run tests, make sure you use the 'Visual Studio Test using Test Agent' task in the Build Definition after this task. 2017-08-01T08:29:40.4047477Z ##[section]Finishing: Deploy TestAgent on test machines

We are trying to run set of tests using 3 tasks. 1st Run Functional Test Task log file:

2017-08-01T08:29:40.4047477Z ##[section]Starting: Run first batch of tests 2017-08-01T08:29:40.8734851Z Preparing task execution handler. 2017-08-01T08:29:41.2953631Z Executing the powershell script: D:\agent_work_tasks\RunVisualStudioTestsusingTestAgent_d353d6a2-e361-4a8f-8d8c-123bebb71028\1.0.49\RunDistributedTests.ps1 2017-08-01T08:29:43.4047175Z DistributedTests: Environment WinRm Protocol HTTP. 2017-08-01T08:29:43.4203434Z DistributedTests: Run Settings File Path : D:\agent_work\2\s\SUIT\SmartPlantElectrical\Tests\SPELSanityTestSuite\SanityTests\SanityTests.testsettings 2017-08-01T08:29:43.7953324Z DistributedTests: Creating run for selected test assemblies with following parameters 2017-08-01T08:29:43.7953324Z DistributedTests: SourceFilter: **\sanitytests_a.orderedtest TestCaseFilter: 2017-08-01T08:29:43.7953324Z DistributedTests: Run title: TestRun_SPEL2018-SUIT_82465 2017-08-01T08:29:43.7953324Z DistributedTests: is automated: True 2017-08-01T08:29:43.7953324Z DistributedTests: test settings id : 6263 2017-08-01T08:29:43.7953324Z DistributedTests: build location: C:\SUITinstallation\AUTs\SmartPlantElectrical\Tests\SPELSanityTestSuite\SanityTests 2017-08-01T08:29:43.7953324Z DistributedTests: build id: 82465 2017-08-01T08:29:43.7953324Z DistributedTests: test configuration mapping: 2017-08-01T08:29:44.3422159Z DistributedTests: Test Run with Id 89461 Queued 2017-08-01T08:29:44.7953194Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T08:29:55.2327218Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T08:30:05.6544901Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T08:30:16.1387782Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T08:30:26.5605373Z DistributedTests: Please use this link to analyze the test run : https://ppmtfs.intergraph.com/tfs/PPMCOL/PPM/_TestManagement/Runs#_a=resultQuery&runId=89461&queryPath=Recent+Run%2FRun+89461 2017-08-01T08:30:26.5605373Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T08:30:26.5605373Z DistributedTests: Total Tests : 1, Passed Tests : 0 2017-08-01T10:18:12.5264158Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T10:18:12.5264158Z DistributedTests: Total Tests : 1, Passed Tests : 0 2017-08-01T10:18:22.9481786Z DistributedTests: Test run '89461' is in 'InProgress' state. 2017-08-01T10:18:22.9481786Z DistributedTests: Total Tests : 1, Passed Tests : 0 2017-08-01T10:18:33.4012032Z DistributedTests: Test run '89461' is in 'Aborted' state. 2017-08-01T10:18:33.4012032Z DistributedTests: Total Tests : 1, Passed Tests : 0 2017-08-01T10:18:43.4167230Z ##[warning]DistributedTests: Test run is aborted. Logging details of the run logs. 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: New test run created. 2017-08-01T10:18:43.8542042Z Test Run queued for Project Build Service. 2017-08-01T10:18:43.8542042Z 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: Test discovery started. 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: Test Run Discovery Completed . Test run id : 89461 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: 1 test cases discovered. 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: Test execution started. Test run id : 89461 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: UnExpected error occured during test execution. Try again. 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: Error : One or more errors occurred.--->The HTTP request timed out after 00:01:40. 2017-08-01T10:18:43.8542042Z 2017-08-01T10:18:43.8542042Z ##[warning]DistributedTests: Test run aborted. Test run id: 89461 2017-08-01T10:18:43.8542042Z ##[error]System.Exception: The test run was aborted, failing the task. 2017-08-01T10:18:44.1354528Z ##[error]PowerShell script completed with 1 errors. 2017-08-01T10:18:44.1354528Z ##[section]Finishing: Run first batch of tests

Rest of the build not running after this.

...

ANSWER

Answered 2017-Aug-03 at 12:56

Update

Unfortunately, Ordered tests are currently not supported with the Run Functional Test task. You can use the Visual Studio test task for running Ordered tests. More details and workaround please refer this threads: Ordered test support in Run Functional Tests task

Since you are using three Run Functional Test Task. First you need to add "Deploy Visual studio test agent" task before every Run Functional Test task.

If the test agent is already installed, it will configure the test agent. but it's mandatory to add before Run Functional test task.

Your build definition should look like

Source https://stackoverflow.com/questions/45435896

QUESTION

Oracle import batch files within a bat file

Asked 2017-Jan-26 at 12:52

I have to run several bat file to import mass data into Oracle. I'd like to run only one bat file.

The batch files are in separeted subfolders like this:

...

ANSWER

Answered 2017-Jan-26 at 12:52

This batch should work, and only requires to set the maximal possible number. The batch will evaluate the current highest number.

Source https://stackoverflow.com/questions/41831165

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install intergraph

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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