viewpoly | R package to visualize genetic maps and QTL analysis

viewpoly is a R library. viewpoly has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

VIEWpoly is a shiny app and R package for visualizing and exploring results from polyploid computational tools using an interactive graphical user interface. The package allows users to directly upload output files from polymapR, MAPpoly , polyqtlR, QTLpoly, diaQTL and genomic assembly, variants, annotation and alignment files. VIEWpoly uses shiny, golem, ggplot2, plotly, and JBrowseR libraries to graphically display the QTL profiles, positions, alleles estimated effects, progeny individuals containing specific haplotypes and their breeding values. It is also possible to access marker dosage and parental phase from the linkage map. If genomic information is available, the corresponding QTL positions are interactively explored using JBrowseR interface, allowing the search for candidate genes. It also provides features to download specific information into comprehensive tables and images for further analysis and presentation.