Capybara | computational tool to measure cell identity

by morris-lab R Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | Capybara Summary

Capybara is a R library. Capybara has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Capybara is a tool to measure cell identity and fate transitions. This approach is designed to measure cell identity as a continuum, at a single-cell resolution. Capybara enables classification of discrete identities as well as cells with multiple identities. This package has a dependency on R version (R >= 3.5.0). For details regarding the methods, usage and application, please refer to the following paper: Kong et al., BioRxiv 2020 (

Support

Quality

Security

License

Reuse

Support

Capybara has a low active ecosystem.

It has 13 star(s) with 2 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 4 have been closed. On average issues are closed in 6 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of Capybara is current.

Quality

Capybara has 0 bugs and 0 code smells.

Security

Capybara has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Capybara code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

Capybara does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

Capybara releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

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Capybara Key Features

No Key Features are available at this moment for Capybara.

Capybara Examples and Code Snippets

No Code Snippets are available at this moment for Capybara.

Community Discussions

Trending Discussions on Capybara

Tests fail only on github actions with rails, elasticsearch and searchkick

Selenium-chromedriver: Cannot construct KeyEvent from non-typeable key

Filling in text box with capybara

Capybara checking HTML class and ID

Error getting a simple example to work in Rails / Turbo / Hotwire

Bootstrap 5 Javascript Functions not Working in Rails 7 app

Unable to build and deploy Rails 6.0.4.1 app on heroku - Throws gyp verb cli error

Writing Capybara expectations to verify phone numbers

Capybara returns Argument error when attach the file

How to setup Selenium Webdriver, Capybara, and Rails Minitest?

QUESTION

Tests fail only on github actions with rails, elasticsearch and searchkick

Asked 2022-Apr-04 at 09:05

Ruby 3.0.3 Rails 7.0.0.alpha2 elasticsearch 7.17.1 searchkick 5.0.3

My tests are all passing on local but not on GitHub action and I don't know why... Do you know how to show the details of the error 500? This is a Capybara test

This is the config that I added

The results

...

ANSWER

Answered 2022-Apr-04 at 09:01

<500: Internal Server Error> indicates that some exception has been raised in your controller that wasn't properly rescued. If you can't reproduce the issue on your development environment you can:

Either add a begin..rescue in your controller's action, then inside the rescue do: p $ERROR_INFO.message ( $ERROR_INFO is a special variable that contains the last exception rescued, it's a more readable way to use $!

Source https://stackoverflow.com/questions/71691653

QUESTION

Selenium-chromedriver: Cannot construct KeyEvent from non-typeable key

Asked 2022-Mar-25 at 12:17

I updated my Chrome and Chromedriver to the latest version yesterday, and since then I get the following error messages when running my Cucumber features:

...

ANSWER

Answered 2022-Feb-03 at 08:25

It seems something has changed in the new version of ChromeDriver and it is no longer possible to send some special chars directly using send_keys method.

In this link you will see how it is solved (in C#) --> Selenium - SendKeys("@") write an "à"

And regarding python implementation, check this out --> https://www.geeksforgeeks.org/special-keys-in-selenium-python/

Specifically, my implementation was (using MAC):

Source https://stackoverflow.com/questions/70967207

QUESTION

Filling in text box with capybara

Asked 2022-Mar-25 at 00:03

I have a text box that I'm trying to fill in with Capybara. I've tried to play around with it and try to figure something's out but my tests don't pass.

Here's

It's for this specific text box:

...

ANSWER

Answered 2022-Mar-24 at 20:58

To fill the using Capybara you can use either of the following locator strategies:

Source https://stackoverflow.com/questions/71608887

QUESTION

Capybara checking HTML class and ID

Asked 2022-Mar-23 at 22:53

I'm currently trying to find this element and have capybara validate that it's there. There's an element that shows up and I'm using page.should have_css to see if this element is there.

...

ANSWER

Answered 2022-Mar-23 at 05:34

Did you try page.should have_css('.ui-grid-icon-cancel') . When looking for a class element, you need to use the notation of a period rather then explicitly putting the word "class". `

Source https://stackoverflow.com/questions/71581142

QUESTION

Error getting a simple example to work in Rails / Turbo / Hotwire

Asked 2022-Feb-09 at 10:13

I am learning Hotwire-rails, following both the gorails.com and the Hotwire.dev examples. I am running Ruby 3.0.2 and Rails 6.1.4.1. The symptom is at the very start. After rails new xxx, I edit Gemfile to add gem 'hotwire-rails', then bundle install. At this point my app/javascript/packs/application.js is now:

...

ANSWER

Answered 2021-Nov-11 at 12:27

This seems like everything is working correctly rails just likes to output what its doing to the console but it should have added those to your file.

Source https://stackoverflow.com/questions/69916763

QUESTION

Bootstrap 5 Javascript Functions not Working in Rails 7 app

Asked 2022-Jan-29 at 22:51

I'm trying to set up my first Rails 7 app and have installed Bootstrap 5 properly (you can see by the CSS) and gotten rid of all the error messages, but the javascript functions (i.e. dropdown menus, offcanvas, etc.) aren't working.

I have tested it with this code:

...

ANSWER

Answered 2022-Jan-29 at 22:51

I had the same problem.

I got things working by adding the bundle script from Bootstrap in the between the body tags of the application.html.erb file:

Source https://stackoverflow.com/questions/70907799

QUESTION

Unable to build and deploy Rails 6.0.4.1 app on heroku - Throws gyp verb cli error

Asked 2022-Jan-02 at 10:07

Hi i was deploying a branch on heroku and threw up this error. I also tried deploying a branch which worked perfectly, but that is also showing the same error.

local yarn verion : 1.22.17 local node version : v12.22.7 Please help !!!

Tried building without yarn.lock and package-lock same thing.

This is how it starts Heroku deployment build log through CLI

...

ANSWER

Answered 2021-Dec-18 at 14:32

I had a similar problem but resolved by following steps.

Run the following command. heroku buildpacks:add heroku/nodejs --index 1
Update node version from 16.x to 12.16.2 in package.json.

Source https://stackoverflow.com/questions/70401055

QUESTION

Writing Capybara expectations to verify phone numbers

Asked 2021-Dec-15 at 21:40

I'm using AWS Textract to pull information from PDF documents. After the scanned text is returned from AWS and persisted to a var, I'm doing this:

phone_number = '(555) 123-4567'

scanned_pdf_text.should have_text phone_number

But this fails about 20% of the time because of the non-deterministic way that AWS is returning the scanned PDF text. On occasion, the phone numbers can appear either of these two ways:

(555)123-4567 or (555) 123-4567

Some of this scanned text is very large, and I'd prefer not to go through the exercise of sanitizing the text coming back if I can avoid it (I'm also not good at regex usage). I also think using or logic to handle both cases seems to be a little heavy handed just to check text that is so similar (and clearly near-identical to the human eye).

Is there an rspec matcher that'll allow me to check on this text? I'm also using Capybara.default_normalize_ws = true but that doesn't seem to help in this case.

...

ANSWER

Answered 2021-Dec-15 at 21:40

Assuming scanned_pdf_text is a string and the only differences you're seeing is in spaces then you can just get rid of the spaces and compare

Source https://stackoverflow.com/questions/70370513

QUESTION

Capybara returns Argument error when attach the file

Asked 2021-Aug-27 at 11:00

I am working on browser automation and trying to attach the file using the Capybara software. I have a button by clicking which my script should start to upload the file. It works already in one place on the same website for me, so I am trying to implement it again.

The way I do it:

...

ANSWER

Answered 2021-Aug-18 at 23:56

When using the block version of attach_file Capybara attaches a listener for clicks on elements and uses that to determine which input you want a file attached to. Since it's not finding it either it's not triggering the click, or the way your code is structured is hiding the click from Capybara. First I'd ask why you're using all and the element selector type to find the button and instead suggest (assuming browser is the Capybara session??)

Source https://stackoverflow.com/questions/68839099

QUESTION

How to setup Selenium Webdriver, Capybara, and Rails Minitest?

Asked 2021-Aug-06 at 15:17

I am currently running WSL2. I have installed google-chrome-stable and chromedriver in the system.

google-chrome-stable: Google Chrome 92.0.4515.131

chromedriver: ChromeDriver 92.0.4515.43

...

ANSWER

Answered 2021-Aug-06 at 05:54

Ok, so instead of setting Capybara.app_host as http://app.example.com/, we need to set it to http://app.lvh.me.

We also need to tell capybara to always include the port.

Source https://stackoverflow.com/questions/68676566

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Capybara

Install the package from GitHub.
The dataset for the cardiomyocyte reprogramming can be found here under GEO: GSE131328. This dataset contains 6 timepoints of this reprogramming process, Day -1, 1, 2, 3, 7, and 14, where Day -1 marks the day of transduction of three transcription factors and Day 14 cells were sorted using a-MHC reporter (Stone et al., 2019). The data can be downloaded in terminal as well as in R.

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