taxize | A taxonomic toolbelt for R | Development Tools library

by ropensci R Version: v0.9.99 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | taxize Summary

taxize is a R library typically used in Utilities, Development Tools applications. taxize has no bugs, it has no vulnerabilities and it has low support. However taxize has a Non-SPDX License. You can download it from GitHub.

[cran version] taxize allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things. The taxize book:

Support

Quality

Security

License

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Support

taxize has a low active ecosystem.

It has 243 star(s) with 60 fork(s). There are 29 watchers for this library.

It had no major release in the last 12 months.

There are 46 open issues and 670 have been closed. On average issues are closed in 34 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of taxize is v0.9.99

Quality

taxize has 0 bugs and 0 code smells.

Security

taxize has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

taxize code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

taxize has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

taxize releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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taxize Key Features

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taxize Examples and Code Snippets

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Community Discussions

Trending Discussions on taxize

Loop names from two dataframe columns through an existing function in R

Rshiny app not displaying plot, just empty placeholder

QUESTION

Loop names from two dataframe columns through an existing function in R

Asked 2020-Dec-08 at 19:20

I have a list of plant names in a dataframe. Plant names come as a couplet with "genus" followed by "species". In my case the couplet is already split across columns (which should help). As a dummy example for three species (Helianthus annuus, Pinus radiatia, and Melaleuca leucadendra):

df <- data.frame(genus=c("Helianthus", "Pinus", "Melaleuca"), species=c("annuus","radiata", "leucadendra"))

I would like to use a function in the package "Taxize" to check these names against a database (IPNI). There is no batch function for this, and annoyingly the format for querying a single name is:

checked <- ipni_search(genus='Helianthus', species='annuus')

What I need is a loop to feed each genus name and it's associated species name into that function. I can do this for just genus:

...

ANSWER

Answered 2020-Dec-08 at 19:20

Loop (or *apply) over the index, not the actual value:

Source https://stackoverflow.com/questions/65205439

QUESTION

Rshiny app not displaying plot, just empty placeholder

Asked 2020-Apr-01 at 20:32

I'm trying to adapt one of the Rshiny app examples for my own use, (treesplit) but I'm struggling to incorporate my own data into the functions. I believe I have successfully incorporated my own data, but the plot itself isn't displaying. The webpage updates with the new space for the plot, but doesn't actually display it.

The functionality is as follows: Choosing yes will take you through the original app's pipeline. Choosing No will take you through my branch.

Choose "No", Then choose "Single", click on any row in the dataset, and click submit. The serverside has a hardcoded test dataset that will be used for the plot function.

I'm hoping someone can see whatever obvious thing I missed. (Pardon all of the libraries, they shouldn't be needed for the example I provided)

GLOBAL

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ANSWER

Answered 2020-Apr-01 at 20:32

Found it! I had missed one dependencey in this block of the server code:

Source https://stackoverflow.com/questions/60979102

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