packrat | Packrat is a dependency management system for R
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kandi X-RAY | packrat Summary
Packrat is a dependency management system for R.
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Trending Discussions on packrat
QUESTION
I am trying to run a packrat:restore() to restore all libraries in my project. When I run the command I get the following message:
So it looks like the 'make' command is not present so that is why the package cannot be build. This executable is located in Rtools. I have Rtools 3.5 installed on my computer. The directory is in the PATH variable:
And sure enough I find make executable in the directory
However when I run the command Sys.which it doesn't return the path to the executable:
I don't understand what the problem is. I have googled this issues and it was either suggested to install the new version of Rtools (however I am running R version 3.6.1, and the newest version of Rtools is for R version 4.x, so this doesn't make sense for me because I don't want to install the new R version), or to add the path of Rtools to the PATH, but is already configured.
Any ideas?
Thanks, Rok
...ANSWER
Answered 2022-Mar-18 at 11:28I think you cannot have spaces in your PATH
.
To test on my system, I started with a PATH
without access to make.exe
.
QUESTION
In "Packrat Parsing: a Practical Linear-Time Algorithm with Backtracking" on page 30 the author states that the context-free grammar (CFG):
...ANSWER
Answered 2022-Jan-11 at 23:02You just didn't test enough. Try inputs consisting of an odd number of a
s. All match the grammar but PEG only accepts those of length 2k−1 for some integer k.
QUESTION
I’m creating a Shiny app that uses the caret package to do some SVM free-text analysis.
The app runs fine without any error in my computer. I’m using R x64 4.0.4 and R studio 1.3.1093
I’m deploying app to an internal enterprise server https://rconnect.xxxx.com/connect/#/apps/####
This app is deployed in the server and started.
But when I reach the line where I run the train function:
ANSWER
Answered 2021-Aug-05 at 01:15Errors like this in Shiny apps are almost always a result of missing packages, which the logs confirm.
Turns out in this case I think the missing package is kernlab
, which I only found by reading the documentation given here: https://topepo.github.io/caret/train-models-by-tag.html#Support_Vector_Machines. It's a suggested package, not imported, so the command suggested in the comments by heds1 would sort this out.
QUESTION
I am working on a toy language for fun, (called NOP) using Bison and Flex, and I have hit a wall. I am trying to parse sequences that look like name1.name2
and name1.func1().name2
and I get a lot of reduce/reduce conflicts. I know -why- am getting them, but I am having a heck of a time figuring out what to do about it.
So my question is whether this is a legitimate irregularity that can't be "fixed", or if my grammar is just wrong. The productions in question are compound_name
and compound_symbol
. It seems to me that they should parse separately. If I try to combine them I get conflicts with that as well. In the grammar, I am trying to illustrate what I want to do, rather than anything "clever".
ANSWER
Answered 2021-Jul-04 at 16:56All of the reduce/reduce conflicts are the result of:
QUESTION
I am working on an R Shiny project to visualize the spread of COVID19 around the world. When I run the app locally, it works just fine, but when I try to deploy the app, it runs into issues which I am assuming are related to storing the shapefiles: I get an error on the map page that reads, "An error has occurred. Check your logs or contact the app author for clarification."
Here is my code so far:
...ANSWER
Answered 2020-Oct-28 at 02:41Files required by a published Shiny app should go in a folder named www
. If you've got them in the same folder as app.R, they won't be detected properly. No idea why, honestly, but here's a couple resources that mention it:
QUESTION
I was developing a shiny-app on a Windows machine in Rstudio. Now I need to develop it on a Linux machine and later on will need to deploy it on a server. Because of the need to run the app across platforms, I was looking into some environment control application so that I don't have to tune and reinstall the needed packages manually.
I tried to use Packrat for this purpose. I made a snapshot on my Windows machine, copied and pasted the project to my Ubuntu, reopened the project on RStudio, installed Packrat and the restore of the packages ran automatically. Then I ran into an issue that some of the packages that requires system dependencies were not installed automatically, e.g. rgdal and jqr. Therefore, I had to manually install those system dependencies manually in a terminal (it took me a while because there were about 10 of them that requires extra system dependencies).
I am wondering if there is an easier way to just automatically handle this. Later on, I will need to work with a system administer to deploy the app to the server. I am wondering if Packrat has the capability of automatically installing system dependencies on Linux machine/server. If anyone has encounter this issue before, or have other better options, please let me know!
Thank you!
...ANSWER
Answered 2020-Sep-23 at 20:21Hello and welcome to StackOverflow.
You are facing a question that is actually much harder to tackle than you may think at first---deployment of complex R package dependencies across different operating systems is a truly hard and, truth be told, unsolved problem!
You can of course use packrat
and renv
for R package dependencies and snapshots of particular versions. But this does not do anything for system-level dependencies which are simply taken as "given". So no to just transfering to another box and saying "abracadabra". Sorry!
The closest we all may have gotten to fixing this may be Docker where you can create a portable unit of execution that can be deployed whereever Docker run: Windows, macOS, different Linux flavours, ... as it encodes everything.
QUESTION
I had a parser that worked well in Scala Packrat parser combinators. I would like to try something faster with the Fastparse library. However, it cannot handle left-recursion infinite loops. Is there any standard way to cope with that?
...ANSWER
Answered 2020-Aug-08 at 19:19I don't know much about Fastparse, but I'll try to answer your question nevertheless. Right now, your grammar looks something like this:
QUESTION
I'm new to Docker and I'm trying to understand the following setup.
I want to debug my docker container to see if it is receiving AWS credentials when running as a task in Fargate
. It is suggested that I run the command:
ANSWER
Answered 2020-Jul-08 at 07:01For running a command inside docker container you need to be inside the docker container.
Step 1: Find the container ID / Container Name that you want to debug
docker ps
A list of containers will be displayed, pick one of them
Step 2 run following command
docker exec -it bash
and then enter wait for few seconds and you will be inside the docker container with interactive mode Bash
for more info read https://docs.docker.com/engine/reference/commandline/exec/
QUESTION
I am using the virtualstaticvoid buildpack for heroku, but it is on the heroku-16 stack and only supports up to version 3.4.4 of R. I am after a buildpack that works on the latest stack (heroku-18) and supports at least version 3.6 of R, and has no outdated dependencies. The hmdc buildpack appears to support heroku-18 and version 3.6.0 of R, but requires packrat which is soft deprecated in favour of renv.
...ANSWER
Answered 2020-May-30 at 02:08Some good news, virtual_static_void has been updated so the R buildpack
now uses version 3.6.3
, works on both heroku-18
and heroku-16
stacks, and it supports renv
.
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