liana | LIANA : a LIgand-receptor ANalysis frAmework

 by   saezlab R Version: 0.1.11 License: GPL-3.0

kandi X-RAY | liana Summary

kandi X-RAY | liana Summary

liana is a R library. liana has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

The continuous developments of single-cell RNA-Seq (scRNA-Seq) have sparked an immense interest in understanding intercellular crosstalk. Multiple tools and resources that aid the investigation of cell-cell communication (CCC) were published recently. However, these methods and resources are usually in a fixed combination of a tool and its corresponding resource, but in principle any resource could be combined with any method.
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              liana has a low active ecosystem.
              It has 101 star(s) with 15 fork(s). There are 9 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 4 open issues and 88 have been closed. On average issues are closed in 28 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of liana is 0.1.11

            kandi-Quality Quality

              liana has no bugs reported.

            kandi-Security Security

              liana has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              liana is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              liana releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            liana Key Features

            No Key Features are available at this moment for liana.

            liana Examples and Code Snippets

            No Code Snippets are available at this moment for liana.

            Community Discussions

            QUESTION

            Python throwing error around API when using requests
            Asked 2021-Nov-03 at 12:04

            I'm new to APIs and am following the exact instructions of every website explaining how one is supposed to get help of the APIs in Python using the requests module. However, no matter what API link I define (of course I went for many free API samples just to test if they work), I get this error: ImportError: cannot import name 'b64encode' from 'base64' I have no idea what the problem is, or what I'm not getting right. Here's my snippet, just as a sample:

            ...

            ANSWER

            Answered 2021-Nov-03 at 12:04

            If you look carefully at the traceback, you will see that it starts with your script, "/home/liana/Desktop/testing.py", goes through a chain of imports, and ends up crashing trying to import b64encode from base64.py.

            The file /home/liana/Desktop/base64.py is something you either created or downloaded. Since it's in the current directory, it supersedes the real base64.py that "/usr/lib/python3.9/email/base64mime.py" is looking for. The file in your current directory clearly does not define the name b64encode, which is the immediate cause of the error.

            To fix the problem, make sure the names of the files in your current directory don't conflict with the names of other top level modules. So either rename it delete /home/liana/Desktop/base64.py.

            Source https://stackoverflow.com/questions/69815970

            QUESTION

            Python local variable 'charcheck' referenced before assignment, why?
            Asked 2020-Nov-06 at 05:02

            I'm trying to write a password validator application using python tkinter. If the inserted password contains at least 2 numbers, at least 2 special characters and a length of at least 7, the password is considered Strong, else Weak.

            If I enter a weak password the program will work, but if I enter a strong password I face this error:

            ...

            ANSWER

            Answered 2020-Nov-05 at 18:10

            Use the global call to access the global variables

            Source https://stackoverflow.com/questions/64702886

            QUESTION

            npm run build & npm start not working, react app
            Asked 2020-Oct-18 at 03:15

            I am a new react student, have no place else to ask this question and can't solve it on my own because I'm really confused, I don't even know how to put this question together properly. I'm following the instructions from a react course.

            I installed node.js, created a new project folder, then in the terminal I wrote create react-app . everything worked, and then wrote npm run build and npm start, but both didn't work.

            Heres the error messages for npm run build:

            ...

            ANSWER

            Answered 2020-Oct-18 at 02:46

            Firstly to create your project based on "create-react...." You have to use the exactly command "npx create-react-app 'yournameProject'" Then open your folder in a text editor like visual code and run the following command -> "npm start" It shouldnt give you error

            About your problem: I think you have stepped something

            So try to use first "npm i" then "npm start"

            Source https://stackoverflow.com/questions/64409105

            QUESTION

            Partially fill SVG element by setting a value
            Asked 2020-Apr-25 at 05:40

            I am trying to make an interactive health bar in my SVG dog interface. Idea is very simple: suppose we have 100hp, then the element is fully red, if we have 50hp, the element is half-red.
            Here is the code of the SVG health bar element:

            ...

            ANSWER

            Answered 2020-Apr-25 at 05:40

            You can use a linearGradient to do this. We need two gradient stops at the same place to give a sharp colour change.

            Source https://stackoverflow.com/questions/61421301

            QUESTION

            UICollectionView doesn't update all cells properly via cellForItemAt
            Asked 2020-Mar-02 at 20:40

            I have the following setup: a UICollectionView with a custom cell, where the user can select multiple cells and then perform some heavy image operation. Now I try to update the selected cells which the user selected with the result of that operation, which will be produced by a function of the subclassed custom cell. For all visible cells, the function is called on button press by the user and for all other cells, this happens via cellForItemAt in order to be most efficient.

            However, I face the problem now, that the visible cells are all updated but then after scrolling the cells right behind or before the visible cells do not get updated via cellForItemAt but only when scrolling forth and back. Please see the attached video.

            For demonstration purposes I just show a green UIView for the image operation. Because that operation is resource heavy, I cannot use any of the UICollectionView reloadData or similar, as they would deselect the selected cells, and manual re-selection will cause flickering.

            ViewController

            ...

            ANSWER

            Answered 2020-Mar-02 at 20:40

            UICollectionView defaults to prefetchingEnabled == YES, which means that the collection view will request cells before it needs to display them. If the app's state changes such that the cells that have already been fetched need to be displayed differently, you can implement the collectionView:willDisplayCell:forItemAtIndexPath: method to update the cell.

            It looks like this is exactly your problem... you turn on a feature that should change the way the cells look, but the cells that have been fetched but which aren't visible don't get updated. Implementing collectionView:willDisplayCell:forItemAtIndexPath: should solve the problem.

            Source https://stackoverflow.com/questions/60495793

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install liana

            If you wish to make use of the CellChat algorithm:.

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            https://github.com/saezlab/liana.git

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            gh repo clone saezlab/liana

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            git@github.com:saezlab/liana.git

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