transrate | Understand your transcriptome assembly

by blahah Ruby Version: v1.0.3 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | transrate Summary

transrate is a Ruby library. transrate has no bugs, it has no vulnerabilities and it has low support. However transrate has a Non-SPDX License. You can download it from GitHub.

Understand your transcriptome assembly

Support

Quality

Security

License

Reuse

Support

transrate has a low active ecosystem.

It has 81 star(s) with 26 fork(s). There are 11 watchers for this library.

It had no major release in the last 12 months.

There are 61 open issues and 107 have been closed. On average issues are closed in 184 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of transrate is v1.0.3

Quality

transrate has 0 bugs and 0 code smells.

Security

transrate has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

transrate code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

transrate has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

transrate releases are available to install and integrate.

transrate saves you 1226 person hours of effort in developing the same functionality from scratch.

It has 2760 lines of code, 127 functions and 29 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed transrate and discovered the below as its top functions. This is intended to give you an instant insight into transrate implemented functionality, and help decide if they suit your requirements.

Calculate the Blast overlap .
Initialize a new Mapper .
Prints the given list of dependencies
Makes a snapshot of the given _blast_ .
Recursively classify the given output .
Calculate the score of the given output
Build a snapshot
Analyse an assembly .
Checks if the command is installed .
Parse the command - line arguments

Get all kandi verified functions for this library.

transrate Key Features

No Key Features are available at this moment for transrate.

transrate Examples and Code Snippets

No Code Snippets are available at this moment for transrate.

Community Discussions

Trending Discussions on transrate

Very poor performance in my matplotlib script

Error when Splitting an .xml file using java 8

QUESTION

Very poor performance in my matplotlib script

Asked 2020-Apr-02 at 08:56

My code here is performing very badly. I barely get more than 10 fps when changing things on the slider. Granted I am not very well-versed with matplotlib, but can someone point out what I am doing wrong and how to fix it?

Note: I am handling a lot of data, around 3*100000 points in a worst case scenario... Also not sure if this is needed but I am running on the 'TkAgg' backend.

Here is my code (it is a code to plot and run an SIR epidemiology mathematical model):

...

ANSWER

Answered 2020-Apr-02 at 08:56

Use a proper ODE solver like scipy.integrate.odeint for speed. Then you can use larger time steps for the output. With an implicit solver like odeint or solve_ivp with method="Radau" the coordinate planes that are boundaries in the exact solution will also be boundaries in the numerical solution, so that the values never become negative.

Reduce the plotted data set to match the actual resolution of the plot image. The difference from 300 points to 1000 points may still be visible, there will be no visible difference from 1000 points to 5000 points, probably even not an actual difference.

matplotlib draws its images via a scene tree as objects, using slow python iteration. This makes it very slow if there are more than a couple 10000 objects to draw, so it is best to limit the number of details to this number.

Code for the ODE solver

to solve the ODE I used solve_ivp, but it makes no difference if odeint is used,

Source https://stackoverflow.com/questions/60925986

QUESTION

Error when Splitting an .xml file using java 8

Asked 2018-Mar-11 at 19:16

Okay so I am new to coding and have been trying to get this java code to do what I want but so far I have had nothing but problems trying to get it to work correctly.

from what I can tell it gets to this portion of the code:

...

ANSWER

Answered 2018-Mar-11 at 14:45

You can use Java xml api like so

Source https://stackoverflow.com/questions/49220987

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install transrate

You can download it from GitHub.
On a UNIX-like operating system, using your system’s package manager is easiest. However, the packaged Ruby version may not be the newest one. There is also an installer for Windows. Managers help you to switch between multiple Ruby versions on your system. Installers can be used to install a specific or multiple Ruby versions. Please refer ruby-lang.org for more information.