vcf-mongo | small collection of scripts that uses MongoDB

by kristoff-it Ruby Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | vcf-mongo Summary

vcf-mongo is a Ruby library. vcf-mongo has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

A small collection of scripts that uses MongoDB to store VCF files in collections. A single collection can contain multiple VCF file that get soft-merged, meaning that you can conceptually think a collection as a big VCF file, but no information is lost, as some fields are multiplexed (the ID field becomes an IDs array field, for example) leaving the choice of how to merge the data (when necessary) to the querying scripts (either provided or custom built by the user). A soft-merge approach should offer a somewhat natural way of querying the database while still offering good flexibility in terms of fruition. An example script that queries for private variants is also provided.

Support

Quality

Security

License

Reuse

Support

vcf-mongo has a low active ecosystem.

It has 6 star(s) with 2 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

vcf-mongo has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of vcf-mongo is current.

Quality

vcf-mongo has 0 bugs and 0 code smells.

Security

vcf-mongo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

vcf-mongo code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

vcf-mongo does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

vcf-mongo releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

It has 444 lines of code, 26 functions and 3 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed vcf-mongo and discovered the below as its top functions. This is intended to give you an instant insight into vcf-mongo implemented functionality, and help decide if they suit your requirements.

fix
Loads the CSV files from the CSV file .
append documents to the Mongoid
Merges two records into the array
Imports a batch of documents into the collection .
Rename a collection
Check to see if the collection is valid
Check database consistency
initialize the Metadata collection of records
Updates the metadata from the database .

Get all kandi verified functions for this library.

vcf-mongo Key Features

No Key Features are available at this moment for vcf-mongo.

vcf-mongo Examples and Code Snippets

No Code Snippets are available at this moment for vcf-mongo.

Community Discussions

No Community Discussions are available at this moment for vcf-mongo.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install vcf-mongo

You can download it from GitHub.
On a UNIX-like operating system, using your system’s package manager is easiest. However, the packaged Ruby version may not be the newest one. There is also an installer for Windows. Managers help you to switch between multiple Ruby versions on your system. Installers can be used to install a specific or multiple Ruby versions. Please refer ruby-lang.org for more information.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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