snapp_prep | Prepare XML input files for divergence-time estimation

by mmatschiner Ruby Version: Current License: No License

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kandi X-RAY | snapp_prep Summary

snapp_prep is a Ruby library. snapp_prep has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

The Ruby script snapp_prep.rb prepares XML format input files for the software SNAPP, given a phylip format SNP matrix, a table linking species IDs and specimen IDs, and a file specifying age constraints. Optionally, a starting tree can be provided (recommended) and the number of MCMC iterations used by SNAPP can be specified. Files prepared by this script use a particular combination of priors and operators optimized for SNAPP analyses that aim to estimate species divergence times (note that all population sizes are linked in these analyses). Detailed annotation explaining the choice of priors and operators will be included in the XML file (unless turned off with option -n). A manuscript on divergence-time estimation with SNAPP is in preparation.

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Support

snapp_prep has a low active ecosystem.

It has 10 star(s) with 2 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

There are 3 open issues and 2 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of snapp_prep is current.

Quality

snapp_prep has no bugs reported.

Security

snapp_prep has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

snapp_prep does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

snapp_prep releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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snapp_prep Key Features

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snapp_prep Examples and Code Snippets

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Vulnerabilities

No vulnerabilities reported

Install snapp_prep

You can download it from GitHub.
On a UNIX-like operating system, using your system’s package manager is easiest. However, the packaged Ruby version may not be the newest one. There is also an installer for Windows. Managers help you to switch between multiple Ruby versions on your system. Installers can be used to install a specific or multiple Ruby versions. Please refer ruby-lang.org for more information.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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