sequencescape | cloud based and highly extensible LIMS system

by sanger Ruby Version: v14.20.1-5212047595-develop License: Non-SPDX

X-Ray Key Features Code Snippets(3)Community Discussions Vulnerabilities Install Support

kandi X-RAY | sequencescape Summary

sequencescape is a Ruby library. sequencescape has no bugs, it has no vulnerabilities and it has low support. However sequencescape has a Non-SPDX License. You can download it from GitHub.

Sequencescape is a cloud based and highly extensible LIMS system for use in labs with large numbers of samples. Current installation supports over 5 million samples and 1.8 million pieces of labware and is used in a organisation of 900 people.

Support

Quality

Security

License

Reuse

Support

sequencescape has a low active ecosystem.

It has 73 star(s) with 32 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 170 open issues and 262 have been closed. On average issues are closed in 223 days. There are 9 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of sequencescape is v14.20.1-5212047595-develop

Quality

sequencescape has 0 bugs and 0 code smells.

Security

sequencescape has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

sequencescape code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

sequencescape has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

sequencescape releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed sequencescape and discovered the below as its top functions. This is intended to give you an instant insight into sequencescape implemented functionality, and help decide if they suit your requirements.

Creates a new TCP connection .
Generate a sample .
Configures the model attributes for the model .
Convenience method to generate links for a relation based on a relationship .
Encodes a string .
Creates a new LDAP session .
Creates a new instance .
Helper method to handle a single array of attributes
Builds all the assets related to the specified request .
Creates a new Study instance .

Get all kandi verified functions for this library.

sequencescape Key Features

No Key Features are available at this moment for sequencescape.

sequencescape Examples and Code Snippets

,Getting started (using Docker)

Ruby

Lines of Code : 4

License : Non-SPDX (NOASSERTION)

Copy

RESET_DATABASE=true docker-compose up

docker-compose up

docker-compose -f docker-compose-dev.yml up

docker-compose build

,Linting and formatting

Ruby

Lines of Code : 3

License : Non-SPDX (NOASSERTION)

Copy

bundle exec rubocop

yarn prettier --check .
yarn prettier --write .

Starting rails

Ruby

Lines of Code : 3

License : Non-SPDX (NOASSERTION)

Copy

bundle exec rails s

bundle exec rake jobs:work

bundle exec ./script/delayed_job start

Community Discussions

No Community Discussions are available at this moment for sequencescape.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install sequencescape

To set up a local development environment in Docker, you have to build a new Docker image for Sequencescape. start a stack of services that include a mysql database, and reset this database contents. You can do all together by running the command:.
This section only applies if you don't have Docker installed or if you prefer a native installation of Sequencescape.
To automatically install the required gems, set-up default configuration files, and set up your database run:.
In the event you have trouble with the automatic process, you may wish to step through the various steps manually.
Create the database tables bundle exec rake db:setup
Install webpacker and the required JS libraries bundle exec rails webpacker:install

Support

In addition to the externally hosted YARD docs, you can also run a local server:. You can then access the Sequencescape documentation through: http://localhost:8808/docs/sequencescape. Yard will also try and document the installed gems: http://localhost:8808/docs.

Find more information at: