bowtie | Simple admin interface for MongoMapper

by tomas Ruby Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | bowtie Summary

bowtie is a Ruby library. bowtie has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Bowtie reads the information on your models and creates a nice panel in which you can view, edit and destroy records easily.

Support

Quality

Security

License

Reuse

Support

bowtie has a low active ecosystem.

It has 50 star(s) with 14 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 3 have been closed. On average issues are closed in 30 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of bowtie is current.

Quality

bowtie has 0 bugs and 0 code smells.

Security

bowtie has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

bowtie code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

bowtie does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

bowtie releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

bowtie saves you 478 person hours of effort in developing the same functionality from scratch.

It has 1125 lines of code, 81 functions and 23 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed bowtie and discovered the below as its top functions. This is intended to give you an instant insight into bowtie implemented functionality, and help decide if they suit your requirements.

Renders an array of rows for a given row .
Returns a hash representation of the associations
Returns all validators for a validator .
returns json file from the file
Returns an array of strings
return array of fields
Returns array of all subclasses
Gets the model names of the model .
Get page number
Returns the class of the model class

Get all kandi verified functions for this library.

bowtie Key Features

No Key Features are available at this moment for bowtie.

bowtie Examples and Code Snippets

No Code Snippets are available at this moment for bowtie.

Community Discussions

Trending Discussions on bowtie

How to access an app installed in a Docker container from another Docker container?

Snakemake - How to set conda environment path

How to extract a group of values from a list after finding the group with the best "score", using python?

'Compressor detection can only be called on some xcontent bytes or compressed xcontent bytes" error when indexing a list of dictionaries

How to put some of the values of a list inside a dictionary, using python?

How can I read data from a list and index specific values into Elasticsearch, using python?

How to get the sum out of my switch in Swift?

How can I view web page content that is generated using angular JS?

Create a Bowtie Pattern with Python 3.0

Snakemake Wildcards SyntaxError

QUESTION

How to access an app installed in a Docker container from another Docker container?

Asked 2021-Jan-08 at 10:25

I have a Python server app running in a Python:alpine container. The server app makes use of different biological pipelines such as BLAST or Bowtie and others (all applications on their own without networking functionality).

Would it be better to install the third-party software in the Python:alpine container of the server app, or to have separate containers for each app? I think the second one would make more sense.

However, if I now have 3+ containers with my server app, BLAST, Bowtie, etc., how do I access these third-party apps from my server app?

Another advantage of having multiple containers would be that images exist on Docker hub for all the apps my server app requires.

To be clear, it is not about sharing data between containers (e.g. volumes, binds), but to make direct calls to apps in other containers.

...

ANSWER

Answered 2021-Jan-07 at 23:18

Let me address the question that I think is most important to you.

Assuming the containers are running on the same host, there are (>)2 ways:

preferred: docker --publish

Using this mechanism, the container's port(s) are mapped to host port(s)

For example:

Source https://stackoverflow.com/questions/65621211

QUESTION

Snakemake - How to set conda environment path

Asked 2020-Dec-15 at 08:18

In Snakemake, conda environments can be easily set up by defining rules as such conda: "envs/my_environment.yaml". This way, YAML files specify which packages to install prior to running the pipeline.

Some software requires a path to third-party-software, to execute specific commands.

An example of this is when generating a reference index with RSEM (example from GitHub page DeweyLab - RSEM):

...

ANSWER

Answered 2020-Dec-15 at 06:34

There are two ways that I've dealt with this.

1: Let Conda Handle PATH

That specific option (--star-path) only needs to be specified if STAR is not on PATH. However, if STAR is included in your YAML for this rule, then Conda will place it on PATH as part of the environment activation, and so that option won't be needed. Same goes for --bowtie-path. Hence, for such a rule the YAML might be something like:

Source https://stackoverflow.com/questions/65290120

QUESTION

How to extract a group of values from a list after finding the group with the best "score", using python?

Asked 2020-Jul-15 at 19:39

I have a list ('dummy"). I want to extract ONLY the values related to the best 'Score'. For example, from the list I should have the following values extracted:

...

ANSWER

Answered 2020-Jul-15 at 18:51

You can try this one.

Source https://stackoverflow.com/questions/62921679

QUESTION

'Compressor detection can only be called on some xcontent bytes or compressed xcontent bytes" error when indexing a list of dictionaries

Asked 2020-Jul-09 at 19:51

This question is related to this other one: How can I read data from a list and index specific values into Elasticsearch, using python?

I have written a script to read a list ("dummy") and index it into Elasticsearch. I converted the list into a list of dictionaries and used the "Bulk" API to index it into Elasticsearch. The script used to work (check the attached link to the related question). But it is no longer working after adding "timestamp" and the function "initialize_elasticsearch".

So, what is wrong? Should I be using JSON instead of the list of dictionaries?

I have also tried using only 1 dictionary of the list. In that case there is no error but nothing gets indexed.

THIS IS THE ERROR

THIS IS THE LIST (dummy)

...

ANSWER

Answered 2020-Jul-07 at 16:09

This somewhat cryptic error msg is telling you that you need to pass single objects instead of an array of them to the bulk helpers.

So you need to rewrite your generate_actions fn like so:

Source https://stackoverflow.com/questions/62778983

QUESTION

How to put some of the values of a list inside a dictionary, using python?

Asked 2020-Jun-25 at 15:53

I have a list (see LIST) that I want to send to a dictionary.

But I do not want to send all the data. Just some values (see SOME VALUES/FEATURES) which happen to repeat many times. For example, the word "Model: xxx" appears like 7 times. "xxx" is the name of the model and it will change.

So far I can only put in the dictionary the last values of the list. How can I put all the values from the list into the dictionary?

SOME VALUES:

Labels: xxxx

Model: xxxx

Image: xxxx

Inference: xxxx

Score: xxxx

TPU_temp(°C): xxxx

Time(ms): xxx ---There are 2 of these, I do not know if it is possible to extract ONLY the second one. But if not, no problem. Extracting both will be fine.--

THIS IS THE CODE - ATTEMPT 1

...

ANSWER

Answered 2020-Jun-25 at 15:53

If I understood your question correctly (it's a little hard to understand what you're really looking for), this code will happily put all of the data into a dict-of-lists:

Source https://stackoverflow.com/questions/62541255

QUESTION

How can I read data from a list and index specific values into Elasticsearch, using python?

Asked 2020-Jun-25 at 15:33

I have used "paramiko" to connect from my PC to a devboard, and execute a script. Then I am saving the results of this script in a list (output). I want to extract some values of the list and insert them into Elasticsearch. I have done it manually with the first result of the list. But how can I automate for the rest of the values? Do I need "regex"? Please give me some clues.

Thank you

THIS IS PART OF THE CODE THAT CONNECTS TO THE DEVBOARD, EXECUTES A SCRIPT AND RETRIEVES A LIST=output

...

ANSWER

Answered 2020-Jun-18 at 22:40

Remove the line breaks
Split the text by a common delimiter (----INFERENCE TIME---- would be a good start I think)
Extract the keys & values using for example r'(\w+:)\s(.*)' or a named lookbehind such as r'(?<=Note: ).*' etc
Parse the numeric values (time, score, temperature, ...) -- you'll thank me later ;)
Extend the Model mapping w/ a keyword datatype -- otherwise the dot will be tokenized away and you'll wonder why you can't search for exact matches nor aggregate on it
Prepare the objects that you'll want to sync
Bulk upload to ElasticSearch

Source https://stackoverflow.com/questions/62459572

QUESTION

How to get the sum out of my switch in Swift?

Asked 2020-Apr-20 at 02:30

Hi I'm stuck trying to solve this: class Classy, to represent how classy someone or something is. "Classy". If you add fancy-looking items, "classiness" increases!

Create a method, addItem() in Classy that takes a string as input, adds it to the "items" array and updates the classiness total.

Add another method, getClassiness() that returns the "classiness" value based on the items.

The following items have classiness points associated with them:

"tophat" = 2
"bowtie" = 4
"monocle" = 5

Everything else has 0 points.

The sum is not performing correctly. The first problem is when it falls in te default case, everything is 0, I've tried in the default with:

...

ANSWER

Answered 2020-Apr-20 at 02:30

Your switch case need update, it need to loop and the case is String not Array

Source https://stackoverflow.com/questions/61312609

QUESTION

How can I view web page content that is generated using angular JS?

Asked 2020-Mar-10 at 00:45

I have an app that uses requests to analyze and act on web page text. But it does not seem to work on this page that is likely built with angular: https://bio.tools/bowtie, in that the source HTML is different than the actual content. I am trying to collect the DOI that is referenced on the page (10.1186/gb-2009-10-3-r25), but when requests picks up the HTML source the DOI is not there.

I've heard that Google is able to parse pages that are generated using javascript. How do they do it? Any tips on viewing the DOI information with python?

...

ANSWER

Answered 2020-Mar-10 at 00:45

You probably need an engine which runs the javascript of the http response for you (like an internet browser does). You can use selenium for this and then parsing the html it returns with beautifulsoup.

Example:

Source https://stackoverflow.com/questions/60610062

QUESTION

Create a Bowtie Pattern with Python 3.0

Asked 2020-Jan-25 at 22:28

Given a odd positive integer h, greater than or equal to 5, create a bowtie pattern with h rows and 2h columns.

...

ANSWER

Answered 2020-Jan-25 at 21:24

You can build up the top half by left and right justifying the * repeated as many times as necessary (we use range with a step for this as the first row will have 1 *, the next 2 more, the next 2 more again up until we reach N) padded left and right with width n, eg:

Source https://stackoverflow.com/questions/59913437

QUESTION

Snakemake Wildcards SyntaxError

Asked 2020-Jan-21 at 16:26

I know this is a common error and I already checked other posts but it didn't resolved my issue. I would like to use the name of the database I use for SortMeRNA rule (rRNAdb=config["rRNA_database"]) the same way I use version=config["genome_version"]. But obviously, I can't.

...

ANSWER

Answered 2020-Jan-21 at 16:26

All output files need to have same wildcards, or else it would cause conflict in resolving job dependencies. Not all files in output: have {rRNAdb} wildcard, which is causing this problem. For example, if you have two {rRNAdb} values, both would write to file "{OUTDIR}/temp/{sample}.fastq", which snakemake correctly doesn't allow.

Source https://stackoverflow.com/questions/59824038

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

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