crispr | crispr is CLI tool allowing to scaffold project | Command Line Interface library

 by   yoav-lavi Rust Version: v0.3.1 License: MIT

kandi X-RAY | crispr Summary

kandi X-RAY | crispr Summary

crispr is a Rust library typically used in Utilities, Command Line Interface applications. crispr has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

crispr is a CLI tool allowing to scaffold a project from a template with a .crispr.{toml,json} configuration file. The template uses tokens that need to be replaced per scaffolded project (e.g. {{REPO_NAME}}), which are set in the configuration file as either user replaceable or with predetermined values. crispr reads the configuration, asks the user for any needed values and makes the replacements as needed, showing a diff in the process. crispr respects .gitignore files and only changes files that should be committed. The .crispr.{toml,json} configuration file itself is automatically ignored when replacing tokens.
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              crispr has a low active ecosystem.
              It has 18 star(s) with 0 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              crispr has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of crispr is v0.3.1

            kandi-Quality Quality

              crispr has no bugs reported.

            kandi-Security Security

              crispr has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              crispr is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              crispr releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

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            crispr Key Features

            No Key Features are available at this moment for crispr.

            crispr Examples and Code Snippets

            No Code Snippets are available at this moment for crispr.

            Community Discussions

            QUESTION

            VSCode Kubernetes Extension: Unable to parse config file .aws/config
            Asked 2021-Apr-18 at 21:19

            Using latest VSCode and the plugin version.

            AWS Toolkit is working fine.

            kubectl get pods works fine from terminal.

            Kubernetes extension showing the cluster name, BUT while trying to open Nodes or other things getting this error:

            ...

            ANSWER

            Answered 2021-Apr-17 at 15:38

            I rearranged the config file and it works now.

            Working aws config:

            Source https://stackoverflow.com/questions/66800721

            QUESTION

            How do i create env from .yml file in conda in windows?
            Asked 2020-Aug-03 at 00:49

            I have just started using miniconda on windows and was creating an environment through a .yml file but got this error.

            ...

            ANSWER

            Answered 2020-Aug-03 at 00:49

            There are a couple of issues. First, going across platforms (linux-64 to win-64) is not directly supported. There are other answers that address this. Second, and more prohibitive, is that Bioconda does not support Windows and some of the packages (e.g., hmmer) are specifically from there.

            Alternatives could be either building up the dependencies in Conda env, plus a compiler meta-package (compiler-cxx, make), then installing non-Windows software from source (e.g., see HMMER documentation); or running Conda under WSL.

            Source https://stackoverflow.com/questions/63214608

            QUESTION

            python script stops running on terminal after 1 minute
            Asked 2020-May-27 at 10:34

            I am facing a problem regarding my python script. I am using Ubuntu on my machine as a second operating system and I have written a python code to output different information regarding some proteins. after giving me ouput for the first protein, it slows down way to much in the middle of the process for the second protein and at some point it wont respond anymore. when I type control+c I get this message :

            ...

            ANSWER

            Answered 2020-May-27 at 10:34

            In the given snippet, if the keyName is found in dict1, i is not incremented. If i remains unchanged, the current iteration will be same as the previous iteration, so it will become an infinite loop.

            If you actually meant to update i on each iteration (which makes more sense), lower the integration level of i+=1 like this

            Source https://stackoverflow.com/questions/62040171

            QUESTION

            how to iterate over strings of a dataframe cell?
            Asked 2020-Apr-20 at 10:01

            I have a Dataframe with text in every cell. I want to iterate over the dataframe and the single characters of its cells and fill a list with either 0 for having a whitespace or 1 for having a character. I tried itertuples, iterrows and iteritems, but for all I can't access every single character of a string.

            ...

            ANSWER

            Answered 2020-Apr-19 at 08:06

            Your posted code (before your last edit) was faulty, lots of unknown stuff in it that gives different errors from what you posted. I fixed your code to be:

            Source https://stackoverflow.com/questions/61291967

            QUESTION

            Iterating Over Strings in Shell Commands Using Snakemake
            Asked 2019-Dec-18 at 19:27

            To give a little background, I'm trying to put together a pipeline to analyze deep sequencing results of in-silico predicted CRISPR off targets. I amplify a known sequence from the genome in 50 different places and each amplicon contains a predicted off target site where my original CRISPR guide could potentially bind. I input the two paired end NGS files into the program CRISPResso along with the amplicon sequence and off-target guide. The two paired end files, amplicon sequence, and gRNA are different for each of the 50 sites. I need to do this with multiple conditions, donors, and replicates so the numbers add up quick.

            I created the snakemake workflow below:

            ...

            ANSWER

            Answered 2019-Dec-15 at 13:51

            The config file you show should have a space after the hyphen, i.e.:

            Source https://stackoverflow.com/questions/59342187

            QUESTION

            Unable to ouput a dynamic array after returning from a friend function
            Asked 2019-Dec-03 at 23:37

            Have a dna class where we add a few inputs into the big_strand (seems to work). Then take another input and subtracts it from the big_strand. This seems to work as well as long as I output within the subtraction function. However, after returning temp and going back to main, outputting simply gives a blank line(the grey line in the image is me highlighting the blank line). Any help is appreciated.

            ...

            ANSWER

            Answered 2019-Dec-03 at 23:37

            You never set temp.max_sequence in your operator-, so it will report a length of zero.

            Also, you don't put a zero byte at the end of the sequence like you do in your operator+.

            Source https://stackoverflow.com/questions/59166811

            QUESTION

            Extracting @mentions from tweets using findall python (Giving incorrect results)
            Asked 2019-Jun-11 at 07:09

            I have a csv file something like this

            ...

            ANSWER

            Answered 2017-Oct-08 at 17:34

            You can use str.findall method to avoid the for loop, use negative look behind to replace (^|[^@\w]) which forms another capture group you don't need in your regex:

            Source https://stackoverflow.com/questions/46633758

            QUESTION

            How to make links in pandas dataframe clickable?
            Asked 2019-Mar-21 at 20:27

            I'm currently using beautifulsoup to scrape a table on a site, this table includes links, I am then converting this table into a pandas dataframe and converting it to html using pandas 'to_html' option, this is all running in Django.

            This is how I'm creating the table in Python:

            ...

            ANSWER

            Answered 2019-Mar-21 at 20:27

            I figured it out, to my 'to_html' I had to add 'escape=False' in brackets at the end.

            so my code before:

            Source https://stackoverflow.com/questions/55288612

            QUESTION

            issue with android KITKAT and older versions
            Asked 2018-Feb-28 at 12:00

            I am viewing an image from url in an imageView and the code works fine with android lollipop and newer versions but not working with android Kitkat and older versions, it returns a blank image rather than the url image .. this is my code : HomeActivity.java

            ...

            ANSWER

            Answered 2018-Feb-14 at 12:41

            QUESTION

            Receiving random cost output on tensorflow regression- python
            Asked 2017-Feb-27 at 04:00

            I am relatively new to tensorflow and I have attempted to adapt some code from a tutorial to process my own data.

            The data can be found here: https://github.com/z12332/tensorflow-test-1/blob/master/export.csv

            Keep in mind, that the dataset being fed consists of only columns 9 though 27 (with nan's converted to 0) and column 30 as the labels

            here is the link to the tutorial code: https://github.com/llSourcell/How_to_use_Tensorflow_for_classification-LIVE/blob/master/demo.ipynb

            I am able to get the program to run without an error message, but for some reason, it outputs 200 training steps of relatively random cost values. As and example, here are the first few steps:

            ...

            ANSWER

            Answered 2017-Feb-27 at 04:00

            Here is a working version of the code, but before I'll offer some notes.

            1) One do some reading at tensorflow mnist tutorial. Im particular see why your placeholder sizes are not correct and why we are going to use a one-hot-encoded version of the labels for this task.

            2) Consider using cross-entropy cost. It is a more well suited cost for this multiclass task.

            3) try not to be too underwhelmed by the performance of this basic model (it does not perform well). Consider exploring the data looking for import features and also look around for what the state of the art performance on this dataset might be.

            Source https://stackoverflow.com/questions/42466123

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install crispr

            You can download it from GitHub.
            Rust is installed and managed by the rustup tool. Rust has a 6-week rapid release process and supports a great number of platforms, so there are many builds of Rust available at any time. Please refer rust-lang.org for more information.

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            crispr is currently built for and tested on the following platforms:.
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          • HTTPS

            https://github.com/yoav-lavi/crispr.git

          • CLI

            gh repo clone yoav-lavi/crispr

          • sshUrl

            git@github.com:yoav-lavi/crispr.git

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