crispr | crispr is CLI tool allowing to scaffold project | Command Line Interface library
kandi X-RAY | crispr Summary
kandi X-RAY | crispr Summary
crispr is a CLI tool allowing to scaffold a project from a template with a .crispr.{toml,json} configuration file. The template uses tokens that need to be replaced per scaffolded project (e.g. {{REPO_NAME}}), which are set in the configuration file as either user replaceable or with predetermined values. crispr reads the configuration, asks the user for any needed values and makes the replacements as needed, showing a diff in the process. crispr respects .gitignore files and only changes files that should be committed. The .crispr.{toml,json} configuration file itself is automatically ignored when replacing tokens.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of crispr
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crispr Examples and Code Snippets
Community Discussions
Trending Discussions on crispr
QUESTION
Using latest VSCode and the plugin version.
AWS Toolkit is working fine.
kubectl get pods works fine from terminal.
Kubernetes extension showing the cluster name, BUT while trying to open Nodes or other things getting this error:
...ANSWER
Answered 2021-Apr-17 at 15:38I rearranged the config file and it works now.
Working aws config:
QUESTION
I have just started using miniconda on windows and was creating an environment through a .yml file but got this error.
...ANSWER
Answered 2020-Aug-03 at 00:49There are a couple of issues. First, going across platforms (linux-64 to win-64) is not directly supported. There are other answers that address this. Second, and more prohibitive, is that Bioconda does not support Windows and some of the packages (e.g., hmmer
) are specifically from there.
Alternatives could be either building up the dependencies in Conda env, plus a compiler meta-package (compiler-cxx
, make
), then installing non-Windows software from source (e.g., see HMMER documentation); or running Conda under WSL.
QUESTION
I am facing a problem regarding my python script. I am using Ubuntu on my machine as a second operating system and I have written a python code to output different information regarding some proteins. after giving me ouput for the first protein, it slows down way to much in the middle of the process for the second protein and at some point it wont respond anymore. when I type control+c I get this message :
...ANSWER
Answered 2020-May-27 at 10:34In the given snippet, if the keyName
is found in dict1
, i
is not incremented.
If i
remains unchanged, the current iteration will be same as the previous iteration, so it will become an infinite loop.
If you actually meant to update i
on each iteration (which makes more sense), lower the integration level of i+=1
like this
QUESTION
I have a Dataframe with text in every cell. I want to iterate over the dataframe and the single characters of its cells and fill a list with either 0 for having a whitespace or 1 for having a character. I tried itertuples, iterrows and iteritems, but for all I can't access every single character of a string.
...ANSWER
Answered 2020-Apr-19 at 08:06Your posted code (before your last edit) was faulty, lots of unknown stuff in it that gives different errors from what you posted. I fixed your code to be:
QUESTION
To give a little background, I'm trying to put together a pipeline to analyze deep sequencing results of in-silico predicted CRISPR off targets. I amplify a known sequence from the genome in 50 different places and each amplicon contains a predicted off target site where my original CRISPR guide could potentially bind. I input the two paired end NGS files into the program CRISPResso along with the amplicon sequence and off-target guide. The two paired end files, amplicon sequence, and gRNA are different for each of the 50 sites. I need to do this with multiple conditions, donors, and replicates so the numbers add up quick.
I created the snakemake workflow below:
...ANSWER
Answered 2019-Dec-15 at 13:51The config file you show should have a space after the hyphen, i.e.:
QUESTION
Have a dna class where we add a few inputs into the big_strand (seems to work). Then take another input and subtracts it from the big_strand. This seems to work as well as long as I output within the subtraction function. However, after returning temp and going back to main, outputting simply gives a blank line(the grey line in the image is me highlighting the blank line). Any help is appreciated.
...ANSWER
Answered 2019-Dec-03 at 23:37You never set temp.max_sequence
in your operator-
, so it will report a length of zero.
Also, you don't put a zero byte at the end of the sequence like you do in your operator+
.
QUESTION
I have a csv file something like this
...ANSWER
Answered 2017-Oct-08 at 17:34You can use str.findall
method to avoid the for loop, use negative look behind to replace (^|[^@\w])
which forms another capture group you don't need in your regex:
QUESTION
I'm currently using beautifulsoup to scrape a table on a site, this table includes links, I am then converting this table into a pandas dataframe and converting it to html using pandas 'to_html' option, this is all running in Django.
This is how I'm creating the table in Python:
...ANSWER
Answered 2019-Mar-21 at 20:27I figured it out, to my 'to_html' I had to add 'escape=False' in brackets at the end.
so my code before:
QUESTION
I am viewing an image from url in an imageView
and the code works fine with android lollipop and newer versions but not working with android Kitkat and older versions, it returns a blank image rather than the url image .. this is my code :
HomeActivity.java
ANSWER
Answered 2018-Feb-14 at 12:41Try this:
QUESTION
I am relatively new to tensorflow and I have attempted to adapt some code from a tutorial to process my own data.
The data can be found here: https://github.com/z12332/tensorflow-test-1/blob/master/export.csv
Keep in mind, that the dataset being fed consists of only columns 9 though 27 (with nan's converted to 0) and column 30 as the labels
here is the link to the tutorial code: https://github.com/llSourcell/How_to_use_Tensorflow_for_classification-LIVE/blob/master/demo.ipynb
I am able to get the program to run without an error message, but for some reason, it outputs 200 training steps of relatively random cost values. As and example, here are the first few steps:
...ANSWER
Answered 2017-Feb-27 at 04:00Here is a working version of the code, but before I'll offer some notes.
1) One do some reading at tensorflow mnist tutorial. Im particular see why your placeholder sizes are not correct and why we are going to use a one-hot-encoded version of the labels for this task.
2) Consider using cross-entropy cost. It is a more well suited cost for this multiclass task.
3) try not to be too underwhelmed by the performance of this basic model (it does not perform well). Consider exploring the data looking for import features and also look around for what the state of the art performance on this dataset might be.
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Install crispr
Rust is installed and managed by the rustup tool. Rust has a 6-week rapid release process and supports a great number of platforms, so there are many builds of Rust available at any time. Please refer rust-lang.org for more information.
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