spark-examples | Apache Spark jobs such as Principal Coordinate Analysis

 by   googlegenomics Scala Version: Current License: Apache-2.0

kandi X-RAY | spark-examples Summary

kandi X-RAY | spark-examples Summary

spark-examples is a Scala library typically used in Big Data, Spark applications. spark-examples has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Apache Spark jobs such as Principal Coordinate Analysis.
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              spark-examples has a low active ecosystem.
              It has 76 star(s) with 38 fork(s). There are 38 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 10 open issues and 26 have been closed. On average issues are closed in 54 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of spark-examples is current.

            kandi-Quality Quality

              spark-examples has 0 bugs and 0 code smells.

            kandi-Security Security

              spark-examples has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              spark-examples code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              spark-examples is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

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              spark-examples releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            spark-examples Key Features

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            spark-examples Examples and Code Snippets

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            Community Discussions

            QUESTION

            Spark fail if not all resources are allocated
            Asked 2022-Mar-25 at 16:07

            Does spark or yarn has any flag to fail fast job if we can't allocate all resoucres?

            For example if i run

            ...

            ANSWER

            Answered 2022-Mar-25 at 16:07

            You can set a spark.dynamicAllocation.minExecutors config in your job. For it you need to set spark.dynamicAllocation.enabled=true, detailed in this doc

            Source https://stackoverflow.com/questions/71619029

            QUESTION

            (gcloud.dataproc.batches.submit.spark) unrecognized arguments: --subnetwork=
            Asked 2022-Feb-01 at 11:30

            I am trying to submit google dataproc batch job. As per documentation Batch Job, we can pass subnetwork as parameter. But when use, it give me

            ERROR: (gcloud.dataproc.batches.submit.spark) unrecognized arguments: --subnetwork=

            Here is gcloud command I have used,

            ...

            ANSWER

            Answered 2022-Feb-01 at 11:28

            According to dataproc batches docs, the subnetwork URI needs to be specified using argument --subnet.

            Try:

            Source https://stackoverflow.com/questions/70939685

            QUESTION

            Spark Job SUBMITTED but not RUNNING after submit via REST API
            Asked 2021-Dec-12 at 21:54

            Following the instructions in this website, I'm trying to submit a job to Spark via REST API /v1/submissions.

            I tried to submit SparkPi in the example:

            ...

            ANSWER

            Answered 2021-Dec-12 at 00:48

            Since you've checked resources and You have enough. It might be network issue. executor maybe cannot connect back to driver program. Allow traffic on both master and workers.

            Source https://stackoverflow.com/questions/70319101

            QUESTION

            AWS EMR step Vs command line spark-submit
            Asked 2021-Nov-19 at 15:06

            What is the difference between submitting a EMR step as below vs running a spark submit on master node of the EMR cluster.

            EMR step

            ...

            ANSWER

            Answered 2021-Nov-19 at 15:06

            Submitting via EMR Step gives some additional monitoring and tooling on the AWS platform.

            • EMR has CloudWatch metrics for running/completed/failed steps.
            • EMR steps dispatch Eventbridge events on complete/failure which can be used as triggers.
            • If your EMR cluster is running on a private subnet, you'll have to tunnel to the subnet to monitor your jobs, EMR step status does not have this limitation.
            • Similar to above, if your cluster is on a private subnet, you'll have to tunnel in via ssh to call spark-submit, EMR API is publicly addressable.
            • EMR RunJobFlowStep has AWS Step Functions integration if you want to run an EMR job as part of a workflow via state machine.

            I'm sure there are others but these are the benefits I've seen.

            Edit: One caveat - with EMR steps you'll need to submit the job via command-runner.jar and these end up as running processes on your master node for the life of the EMR step. If you're running hundreds of steps, you may end up needing a larger master node to support all of these processes.

            Source https://stackoverflow.com/questions/69897312

            QUESTION

            Spark workers 'KILLED exitStatus 143' when given huge resources to do simple computation
            Asked 2021-Nov-16 at 01:47

            Running Spark on Kubernetes, with each of 3 Spark workers given 8 cores and 8G ram, results in

            ...

            ANSWER

            Answered 2021-Nov-16 at 01:47

            Learned a couple things here. The first is that 143 KILLED does not seem to actually be indicative of failure but rather of executors receiving a signal to shutdown once the job is finished. So, seems draconian when found in logs but is not.

            What was confusing me was that I wasn't seeing any "Pi is roughly 3.1475357376786883" text on stdout/stderr. This led me to believe the computation never got that far, which was incorrect.

            The issue here is what I was using --deploy-mode cluster when --deploy-mode client actually made a lot more sense in this situation. That is because I was running an ad-hoc container through kubectl run which was not part of the existing deployment. This fits the definition of client mode better, since the submission does not come from an existing Spark worker. When running in --deploy-mode=cluster, you'll never actually see stdout since input/output of the application are not attached to the console.

            Once I changed --deploy-mode to client, I also needed to add --conf spark.driver.host as documented here and here, for the pods to be able to resolve back to the invoking host.

            Source https://stackoverflow.com/questions/69981541

            QUESTION

            Cannot connect to spark cluster on intellij but spark-submit can
            Asked 2020-Dec-12 at 07:32

            My spark cluster includes 4 workers worked fine if I use spark-submmit command like this:

            ...

            ANSWER

            Answered 2020-Dec-12 at 07:32

            Between all those technologies, I still wonder why spark needs to be run under spark-submit circumstances, you wont see this with Mongodb or Kafka, just spark!

            to achieve this I advise you to use REST API providers like Apache Livy(Although I didn't like it as I tried to use it a year ago) or

            try to make your server "GUI capable" with Xorg or something like that, log on to it, install intelij and submit your jobs in a local fashion, you can use your PC to test the scenarios as intelij can support local spark job runs and when you made sure you doing fine with your syntaxes and your algorithm, ship it to the repository of yours or copy and paste it into your server system and there work with it.

            Good luck.

            Source https://stackoverflow.com/questions/62339097

            QUESTION

            How can I inspect the error reason in spark on kubernetes?
            Asked 2020-Oct-22 at 13:49

            I ran the below command to run the spark job on kubernetes.

            ...

            ANSWER

            Answered 2020-Oct-22 at 13:49

            For more detailed information you can use kubectl describe pod . It will print a detailed description of the selected resources, including related resources such as events or controllers.

            You can also use kubectl get event | grep pod/ - it will show events only for selected pod.

            Source https://stackoverflow.com/questions/64474649

            QUESTION

            Apache Spark spark-submit k8s API https ERROR
            Asked 2020-Aug-31 at 08:43

            Spark version :2.4.4

            k8s version : 1.18

            I have a Spark and a k8s cluster.

            I followed Spark documentation : https://spark.apache.org/docs/2.4.4/running-on-kubernetes.html

            When I submit a job with an HTTP proxy on k8s : everything is ok.

            However with the native HTTPS API on k8s I got this error :

            Previously I had to import k8s API cert to my master Spark (keytool).

            ...

            ANSWER

            Answered 2020-Aug-31 at 08:43

            Solution :

            HTTPS k8s API use cert and token for authentication.

            First download k8s HTTPS API :

            On master spark ->

            Source https://stackoverflow.com/questions/63629870

            QUESTION

            Spark submit fails on Kubernetes (EKS) with "invalid null input: name"
            Asked 2020-Jul-12 at 11:06

            I am trying to run spark sample SparkPi docker image on EKS. My Spark version is 3.0.
            I created spark serviceaccount and role binding. When I submit the job, there is error below:

            ...

            ANSWER

            Answered 2020-Jul-05 at 17:58

            Seems like you are missing the ServiceAccount/AWS role credentials so that your job can connect to the EKS cluster.

            I recommend you set up fine-grained IAM roles for service accounts.

            Basically, you would have something like this (after you set up the roles in AWS):

            Source https://stackoverflow.com/questions/62741285

            QUESTION

            Why External scheduler cannot be instantiated running spark on minikube/kubernetes?
            Asked 2020-Jun-24 at 02:08

            I'm trying to run spark on kubernetes(using minikube with VirtualBox or docker driver, I tested in both) and now I have an error that I don't know how to solve.

            The error is a "SparkException: External scheduler cannot be instantiated". I'm new in Kubernetes world, so I really don't know if this is a newbie error, but trying to resolve by myself I failed.

            Please help me.

            In the next lines, follow the command and the error.

            I use this spark submit command:

            ...

            ANSWER

            Answered 2020-Jun-24 at 02:08

            Based on the log file:

            Source https://stackoverflow.com/questions/62543646

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