labhub | OHSU Open Science Workshop on tools and methods

by apreshill Shell Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | labhub Summary

labhub is a Shell library. labhub has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

This repository and the methods we suggest hardly scratch the surface when it comes to addressing research rigor and reuse, let alone sexism, racism, ageism, or ableism in a lab. We plan to add a reading list to this repository which addresses these issues with more depth and breadth.

Support

Quality

Security

License

Reuse

Support

labhub has a low active ecosystem.

It has 32 star(s) with 14 fork(s). There are 4 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 3 have been closed. On average issues are closed in 0 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of labhub is current.

Quality

labhub has no bugs reported.

Security

labhub has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

labhub does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

labhub releases are not available. You will need to build from source code and install.

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labhub Key Features

No Key Features are available at this moment for labhub.

labhub Examples and Code Snippets

No Code Snippets are available at this moment for labhub.

Community Discussions

Trending Discussions on labhub

Conda command fails silently

JupyterHub with SystemUserSpawner fails

QUESTION

Conda command fails silently

Asked 2019-Apr-03 at 07:57

My anaconda is behaving oddly.

conda list, conda debug, conda install, all return nothing.

I have already reinstalled anaconda2, checked my path on .profile, and it's all there.

1. which -a conda

...

ANSWER

Answered 2017-Nov-08 at 07:15

I have seen this happen in some circumstances if you activate a root environment as a non-root environment, where actual binaries become overwritten with symlinks (possibly pointing back to itself). The symptom you see resembles my issue, and is caused by the executable "conda" actually calling out to a subprocess for an executable "conda_install" for conda install (or similar for the others). For one reason or another, the way of calling the subprocess makes it fail silently if it cannot find the executable. To verify that you have the same problem, you can run ls -al /Users/me/anaconda2/bin and see if any of conda, activate, conda_install, conda_create etc is a dangling symlink or completely missing.

Source https://stackoverflow.com/questions/47040270

QUESTION

JupyterHub with SystemUserSpawner fails

Asked 2019-Feb-27 at 15:05

I'm trying to run a JupyterHub on a virtual machine, using the dockerspawner.SystemUserSpawner, spawning Jupyter Lab instances.

My jupyterhub_config.py has the following (extra) lines:

...

ANSWER

Answered 2019-Feb-27 at 15:05

The mistake is in the c.Spawner.cmd (c.Spawner.cmd = ['jupyter', 'labhub']).

This starts the Docker container with the arguments jupyter labhub, similar to running it from the command line as docker run jupyter/singleuser:0.9 jupyter labhub (with some additional environment variables).

Docker will, however, read the first argument after the container name as the CMD, not as an argument to the CMD in the Dockerfile. That is, the Dockerfile for the base notebook (and thereby the jupyter/singleuser one), has this:

Source https://stackoverflow.com/questions/54889805

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install labhub

You can download it from GitHub.

Support

First off, thanks for taking the time to contribute! We want Labhub to be a community driven project and we want to know about your experience and ideas for facilitating transparency, reproducibility, safety, and inclusion in a research lab. Please feel free to create an issue or submit a pull request, or just fork this repository to use it in your lab.

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