smk-simple-slurm | A simple Snakemake profile for Slurm
kandi X-RAY | smk-simple-slurm Summary
kandi X-RAY | smk-simple-slurm Summary
smk-simple-slurm is a Shell library. smk-simple-slurm has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.
A simple Snakemake profile for Slurm without --cluster-config
A simple Snakemake profile for Slurm without --cluster-config
Support
Quality
Security
License
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Support
smk-simple-slurm has a low active ecosystem.
It has 79 star(s) with 12 fork(s). There are 5 watchers for this library.
It had no major release in the last 12 months.
There are 0 open issues and 9 have been closed. On average issues are closed in 16 days. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of smk-simple-slurm is v1.3.0
Quality
smk-simple-slurm has no bugs reported.
Security
smk-simple-slurm has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
License
smk-simple-slurm is licensed under the CC0-1.0 License. This license is Permissive.
Permissive licenses have the least restrictions, and you can use them in most projects.
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smk-simple-slurm releases are available to install and integrate.
Installation instructions, examples and code snippets are available.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of smk-simple-slurm
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of smk-simple-slurm
smk-simple-slurm Key Features
No Key Features are available at this moment for smk-simple-slurm.
smk-simple-slurm Examples and Code Snippets
No Code Snippets are available at this moment for smk-simple-slurm.
Community Discussions
No Community Discussions are available at this moment for smk-simple-slurm.Refer to stack overflow page for discussions.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install smk-simple-slurm
Download the configuration file config.yaml to your Snakemake project. It has to be in a subdirectory, e.g. simple/. Open it in your favorite text editor and replace all the placeholders surrounded in angle brackets (<>) with the options you use to submit jobs on your cluster. You can override any of the defaults by adding a resources field to a rule, e.g.
Download the configuration file config.yaml to your Snakemake project. It has to be in a subdirectory, e.g. simple/
Open it in your favorite text editor and replace all the placeholders surrounded in angle brackets (<>) with the options you use to submit jobs on your cluster
You can override any of the defaults by adding a resources field to a rule, e.g. rule much_memory: resources: mem_mb=64000
Invoke snakemake with the profile: snakemake --profile simple/
Download the configuration file config.yaml to your Snakemake project. It has to be in a subdirectory, e.g. simple/
Open it in your favorite text editor and replace all the placeholders surrounded in angle brackets (<>) with the options you use to submit jobs on your cluster
You can override any of the defaults by adding a resources field to a rule, e.g. rule much_memory: resources: mem_mb=64000
Invoke snakemake with the profile: snakemake --profile simple/
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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