replong | source code of the paper RepLong - de novo repeat discovery

by ruiguo-bio Shell Version: Current License: No License

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kandi X-RAY | replong Summary

replong is a Shell library. replong has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

RepLong is used to find repetitive elements in the genome using long reads. It uses a fork of canu(and depends on R with library "igraph", python and faidx(Please use faidx version 0.4.7.1, with the command "pip install pyfaidx==0.4.7.1". RepLong is tested on Linux Ubuntu 14.04 and CentOS 7, with GNU awk and split(version >= 8.16).

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Support

replong has a low active ecosystem.

It has 11 star(s) with 2 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 8 open issues and 5 have been closed. On average issues are closed in 83 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of replong is current.

Quality

replong has no bugs reported.

Security

replong has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

replong does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

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replong releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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replong Key Features

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replong Examples and Code Snippets

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Community Discussions

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Vulnerabilities

No vulnerabilities reported

Install replong

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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