ncov | Wuhan 2019-nCoV , data visualization | Data Visualization library

by veaba TypeScript Version: v1.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | ncov Summary

ncov is a TypeScript library typically used in Analytics, Data Visualization applications. ncov has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Focus on Wuhan 2019-nCoV, data visualization, to help analyze the epidemic situation. May the world be well. 关注新型肺炎，数据可视化，以提供帮助分析疫情。愿世界安好。.

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Quality

Security

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Support

ncov has a low active ecosystem.

It has 251 star(s) with 45 fork(s). There are 14 watchers for this library.

It had no major release in the last 12 months.

There are 16 open issues and 8 have been closed. On average issues are closed in 83 days. There are 10 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ncov is v1.0

Quality

ncov has no bugs reported.

Security

ncov has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

ncov is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

ncov releases are available to install and integrate.

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ncov Key Features

No Key Features are available at this moment for ncov.

ncov Examples and Code Snippets

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Community Discussions

Trending Discussions on ncov

snakemake - define input for aggregate rule without wildcards

rvest - remove tags and its content from HTML string

How to find ending index of substring where I don't know the exact string

Cannot get text in every p element using BeautifulSoup in Python

How to parse the string (date value in the given scenario) after the
tag using python and beautifulsoup

How to extract data from dynamic collapsing table with hidden elements using Nokogiri and Ruby

R shiny tables changing headings and light dark mode switch

Laravel bootstrap-vue not working with nav collapse

How to split and make new csv files based on date/day in r?

Bring this json file into R as a dataframe

QUESTION

snakemake - define input for aggregate rule without wildcards

Asked 2021-Jun-08 at 15:40

I am writing a snakemake to produce Sars-Cov-2 variants from Nanopore sequencing. The pipeline that I am writing is based on the artic network, so I am using artic guppyplex and artic minion.

The snakemake that I wrote has the following steps:

zip all the fastq files for all barcodes (rule zipFq)
perform read filtering with guppyplex (rule guppyplex)
call the artic minion pipeline (rule minion)
move the stderr and stdout from qsub to a folder under the working directory (rule mvQsubLogs)

Below is the snakemake that I wrote so far, which works

...

ANSWER

Answered 2021-Jun-08 at 15:40

The rule that fails is rule guppyplex, which looks for an input in the form of {FASTQ_PATH}/{{barcode}}.

Looks like the wildcard {barcode} is filled with barcode49/barcode49.consensus.fasta, which happened because of two reasons I think:

First (and most important): The workflow does not find a better way to produce the final output. In rule catFasta, you give an input file which is never described as an output in your workflow. The rule minion has the directory as an output, but not the file, and it is not perfectly clear for the workflow where to produce this input file.

It therefore infers that the {barcode} wildcard somehow has to contain this .consensus.fasta that it has never seen before. This wildcard is then handed over to the top, where the workflow crashes since it cannot find a matching input file.

Second: This initialisation of the wildcard with sth. you don't want is only possible since you did not constrain the wildcard properly. You can for example forbid the wildcard to contain a . (see wildcard_constraints here)

However, the main problem is that catFasta does not find the desired input. I'd suggest changing the output of minion to "nanopolish/{barcode}/{barcode}.consensus.fasta", since the you already take the OUTDIR from the params, that should not hurt your rule here.

Edit: Dummy test example:

Source https://stackoverflow.com/questions/67805295

QUESTION

rvest - remove tags and its content from HTML string

Asked 2021-May-27 at 22:54

Suppose I have the below text:

...

ANSWER

Answered 2021-May-27 at 22:54

The solution was the following:

Source https://stackoverflow.com/questions/67730746

QUESTION

How to find ending index of substring where I don't know the exact string

Asked 2021-Apr-01 at 23:44

I have data being sent to me where I need to seek out and identify the ending index of the URL within the string. The one piece of information I have is that the URL will always start with "http". Using this information I can get the starting index. In the case of the example below, that is 13.

...

ANSWER

Answered 2021-Apr-01 at 23:44

try last index of " "(a space) , make sure it bigger than the urlStart

or the index of first space after urlStart

Source https://stackoverflow.com/questions/66912807

QUESTION

Cannot get text in every p element using BeautifulSoup in Python

Asked 2020-Aug-07 at 07:08

My code tries to get only the article text from each URLs, however it fails to get every p in the article for every URL. What makes it fails to crawl them?

...

ANSWER

Answered 2020-Aug-07 at 07:08

It doesn't find all of them because youi haven't requested him to do so. find will only return the first occurence. If you want to scrape all the

tags in the

tag you must use the findAll method.

Source https://stackoverflow.com/questions/63293401

QUESTION

How to parse the string (date value in the given scenario) after the
tag using python and beautifulsoup

Asked 2020-Aug-02 at 20:40

Currently, I'm trying to scrape web content using Python, BeautifulSoup.

after 1st block of code execution, got the below result -

...

ANSWER

Answered 2020-Aug-02 at 20:02

Looks like you just need the last element inside every "p" tag. Try this:

Source https://stackoverflow.com/questions/63220276

QUESTION

How to extract data from dynamic collapsing table with hidden elements using Nokogiri and Ruby

Asked 2020-May-13 at 19:33

I am trying to scrape through the following website : https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/cases-in-us.html

to get all of the state statistics on coronavirus.

My code below works:

...

ANSWER

Answered 2020-May-12 at 15:41

That page is using AJAX to load its data.

in that case you may use Watir to fetch the page using a browser

as answered here: https://stackoverflow.com/a/13792540/2784833

Another way is to get data from the API directly.

You can see the other endpoints by checking the network tab on your browser console

Source https://stackoverflow.com/questions/61755704

QUESTION

R shiny tables changing headings and light dark mode switch

Asked 2020-May-04 at 06:56

I am doing a basic visualisation for Covid-19 and in one of the tabs I have a table. I can't seem to get the writing above and below the table in another colour. I've included an image that highlights the writing that I need changed.

I would also like to build a light and dark mode but I can't find any code that would work in the form I have the app now. My code with these issues is currently as follows

...

ANSWER

Answered 2020-May-03 at 22:46

This CSS should get you some or most of the way there.

Source https://stackoverflow.com/questions/61580746

QUESTION

Laravel bootstrap-vue not working with nav collapse

Asked 2020-May-02 at 13:51

I'm trying to get my collapsable navbar working with Vue + Bootstrap in Laravel 7 but am having no luck. The navbar shows without issues but when I resize and attempt to collapse it, the button does nothing and throws no errors.

I have imported bootstrap-vue into my app.ts file and it should be enabled but it does not seem to be.

app.ts

...

ANSWER

Answered 2020-May-02 at 13:51

I think it is because you're not using any Bootstrap-Vue components in your markup. In your case the navbar would have to look something like:

Source https://stackoverflow.com/questions/61535680

QUESTION

How to split and make new csv files based on date/day in r?

Asked 2020-Apr-19 at 18:48

Hi I have an 8GB file which I need to do some analysis. However my RAM is not that great. To efficiently work, I decided to split my csv file based on rows with following code:

...

ANSWER

Answered 2020-Apr-19 at 18:48

We can create a variable from createdAt and then do the group_split to a list of data.frame. Here, we can extract specific substring either with str_replace by removing the first word followed by space, while capturing the next word, space, some digits and use that in the replacement.

Source https://stackoverflow.com/questions/61309591

QUESTION

Bring this json file into R as a dataframe

Asked 2020-Apr-16 at 20:14

How to bring this json file (https://ix.cnn.io/data/novel-coronavirus-2019-ncov/us/historical.min.json) in as a dataframe?

I've tried several ways to no avail.

...

ANSWER

Answered 2020-Apr-16 at 19:27

I was able to add this json file into a dataframe, but you'll also need to unlist the nested lists. Here's how it worked for me:

Source https://stackoverflow.com/questions/61257681

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ncov

You can download it from GitHub.

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