ucg | extremely fast grep-like tool | Regex library

by gvansickle C++ Version: 0.3.3 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | ucg Summary

ucg is a C++ library typically used in Utilities, Regex applications. ucg has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

UniversalCodeGrep (ucg) is an extremely fast grep-like tool specialized for searching large bodies of source code. It is intended to be largely command-line compatible with Ack, to some extent with ag, and where appropriate with grep. Search patterns are specified as PCRE regexes.

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Quality

Security

License

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Support

ucg has a low active ecosystem.

It has 128 star(s) with 18 fork(s). There are 8 watchers for this library.

It had no major release in the last 12 months.

There are 22 open issues and 102 have been closed. On average issues are closed in 64 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of ucg is 0.3.3

Quality

ucg has no bugs reported.

Security

ucg has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

ucg is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

ucg releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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ucg Key Features

No Key Features are available at this moment for ucg.

ucg Examples and Code Snippets

No Code Snippets are available at this moment for ucg.

Community Discussions

Trending Discussions on ucg

Function converting mRNA to peptide sequence depending on the reading frame does not work correctly

Struggling to find the number of distinct amino acids

RecyclerView Items cover entire screen

.replace() method in Java replaces what is replaced

How do I split the gene symbols in R?

Python Dictionary seems correct, but isn't working

How to use a dictionary to modify a strings with python?

Python: command line, sys.argv, "if __name__ == '__main__' "

Arduino function parameters

How to translate RNA to protein without BioPython library

QUESTION

Function converting mRNA to peptide sequence depending on the reading frame does not work correctly

Asked 2021-May-08 at 17:11

I am trying to write a fuction that translates an mRNA sequence to a peptide sequence depending on the nucleotide from which we start counting codons (either the first nucleotide, the second or the third). I have a code for it, but when I print the three results (of the three peptides) I only get a sequence for the first peptide. The last two are blank. Any idea what the problem might be? And how could I return all three peptides by default?

...

ANSWER

Answered 2021-May-08 at 17:11

It always return after first if check. It should be:

Source https://stackoverflow.com/questions/67450015

QUESTION

Struggling to find the number of distinct amino acids

Asked 2021-Mar-24 at 18:27

def amino_acids(mrna):
    aa_dict = {'CUU': 'Leu', 'UAG': '---', 'ACA': 'Thr', 'AAA': 'Lys', 'AUC': 'Ile',
 'AAC': 'Asn','AUA': 'Ile', 'AGG': 'Arg', 'CCU': 'Pro', 'ACU': 'Thr',
 'AGC': 'Ser','AAG': 'Lys', 'AGA': 'Arg', 'CAU': 'His', 'AAU': 'Asn',
 'AUU': 'Ile','CUG': 'Leu', 'CUA': 'Leu', 'CUC': 'Leu', 'CAC': 'His',
 'UGG': 'Trp','CAA': 'Gln', 'AGU': 'Ser', 'CCA': 'Pro', 'CCG': 'Pro',
 'CCC': 'Pro', 'UAU': 'Tyr', 'GGU': 'Gly', 'UGU': 'Cys', 'CGA': 'Arg',
 'CAG': 'Gln', 'UCU': 'Ser', 'GAU': 'Asp', 'CGG': 'Arg', 'UUU': 'Phe',
 'UGC': 'Cys', 'GGG': 'Gly', 'UGA':'---', 'GGA': 'Gly', 'UAA': '---',
 'ACG': 'Thr', 'UAC': 'Tyr', 'UUC': 'Phe', 'UCG': 'Ser', 'UUA': 'Leu',
 'UUG': 'Leu', 'UCC': 'Ser', 'ACC': 'Thr', 'UCA': 'Ser', 'GCA': 'Ala',
 'GUA': 'Val', 'GCC': 'Ala', 'GUC': 'Val', 'GGC':'Gly', 'GCG': 'Ala',
 'GUG': 'Val', 'GAG': 'Glu', 'GUU': 'Val', 'GCU': 'Ala', 'GAC': 'Asp',
 'CGU': 'Arg', 'GAA': 'Glu', 'AUG': 'Met', 'CGC': 'Arg'}
    
    mrna_list = [aa_dict[mrna[i:i + 3]] for i in range(0, len(mrna) - 1, 3)]
    count = 0
    while True:
        if mrna_list[count] == '---':
            
            mrna_list = mrna_list[:count]
            break
        else:
            count += 1
    conversion_result = tuple(mrna_list)
    return [conversion_result, count]

...

ANSWER

Answered 2021-Mar-24 at 18:27

To get only the unique elements of a list, you can usually just convert it to a set and back (at least, when it only contains simple things like strings or numbers). You can then find the number of unique elements by taking the length of that set:

Source https://stackoverflow.com/questions/66786981

QUESTION

RecyclerView Items cover entire screen

Asked 2021-Mar-02 at 23:52

I'm trying to make a simple chat room in android studio, but for some reason each chat message covers the entire screen.

I'm trying to follow the example here on github https://github.com/android/views-widgets-samples/tree/main/RecyclerView/

I'm sure it's just something super simple, but I don't know what the search terms are to find it, and my search so far has been fruitless.

This is my chat room activity:

...

ANSWER

Answered 2021-Mar-02 at 23:52

In your text row item in the ConstraintLayout just change the this

android:layout_height="match_parent"

android:layout_height="wrap_content"

Source https://stackoverflow.com/questions/66448704

QUESTION

.replace() method in Java replaces what is replaced

Asked 2021-Jan-21 at 01:42

Below is my code. I am trying to input "ATC" to get an output of "UAG". All it does is replace 'A' with 'U', 'T' with 'A', 'C' with 'G', and 'G' with 'C' (Just like transcription - DNA to mRNA).

The problem is... when I input ATC, AGC, TGC, or anything with 'C' at the end, the program will replace 'C' with 'G' and then proceed to replace the new 'G' with a 'C'.

.replace('C','G').replace('G','C');

How can I stop the program from replacing the 'C' back to a 'C'? My input should be AGC, and the intended output should be UCG.

...

ANSWER

Answered 2021-Jan-21 at 01:06

String codon = scanner.next();             /*ATGC*/
char[] codonArr = codon.toCharArray();
for (int i=0;i

Source https://stackoverflow.com/questions/65783561

QUESTION

How do I split the gene symbols in R?

Asked 2020-Dec-24 at 06:01

I don't know how to retrieve the first part of the text, I'm quite confused that nothing is working for this. Can you please help me, guys! Thank you in advance.

I used some commands like this in the R studio but there is an error for the data:

Input Command I have used:

...

ANSWER

Answered 2020-Dec-13 at 13:56

You can try this:

Source https://stackoverflow.com/questions/65276186

QUESTION

Python Dictionary seems correct, but isn't working

Asked 2020-Oct-28 at 14:18

I'm currently trying to work on a basic Python dictionary where you input an RNA code, and it gives you the corresponding amino acids. Everything seems to work fine, until I type either "UCU", "UCC", "UCA", "UCG". Why will it not work? Can anyone identify the problem?

Here's the actual code:

...

ANSWER

Answered 2020-Oct-28 at 14:08

You could simplify your code to the following

Source https://stackoverflow.com/questions/64574486

QUESTION

How to use a dictionary to modify a strings with python?

Asked 2020-Oct-17 at 16:59

I have a string and a dictionary. I must replace the parts of the string with corresponding values in the dictionary (using the dictionary keys).

given string:`

...

ANSWER

Answered 2020-Oct-16 at 15:39

Keeping it simple...

Source https://stackoverflow.com/questions/64392149

QUESTION

Python: command line, sys.argv, "if __name__ == '__main__' "

Asked 2020-Oct-01 at 07:37

I have a moderate amount of experience using Python in Jupyter but am pretty clueless about how to use the command line. I have this prompt for a homework assignment -- I understand how the algorithms work, but I don't know how to format everything so it works from the command line in the way that is specified.

The prompt:

Question 1: 80 points

Input: a text file that specifies a travel problem (see travel-input.txt for the format) and a search algorithm (more details are below).

python map.py [file] [search] should read the travel problem from “file” and run the “search” algorithm to find a solution. It will print the solution and its cost.

search is one of [DFTS, DFGS, BFTS, BFGS, UCTS, UCGS, GBFTS, GBFGS, ASTS, ASGS]

Here is the template I was given:

...

ANSWER

Answered 2020-Oct-01 at 07:37

The function definitions go before the if __name__ == "__main__" block. To select the correct function you can put them in a dict and use the four-letter abbreviations as keys, i.e.

Source https://stackoverflow.com/questions/64150674

QUESTION

Arduino function parameters

Asked 2020-Jun-21 at 18:09

Code

...

ANSWER

Answered 2020-Jun-21 at 18:09

The type of the parameter in ucg.getStrWidth is const char*. So use this type as a parameter in your function too.

Source https://stackoverflow.com/questions/62502441

QUESTION

How to translate RNA to protein without BioPython library

Asked 2020-Jun-21 at 06:49

Is there any easy way to convert protein to RNA by using a dictionary and .replace function?

Also, I have no idea how to code all possible variants of the RNA and DNA code redundancy, which makes it possible to code one amino-acid, by the different RNA triplets.

I think, maybe it should be like that:

...

ANSWER

Answered 2020-Jun-19 at 21:10

You can use the keys of your dictionary to create a regular expression for finding the triplets. Then use the dictionary in the re.sub callback function to make the replacements:

Source https://stackoverflow.com/questions/62478429

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ucg

UniversalCodeGrep packages are currently available for Fedora 23/24/25/26, Arch Linux, and OS X.

Support

UniversalCodeGrep 0.3.3 should build and run on any reasonably POSIX-compliant platform where the prerequisites are available. It has been built and tested on the following OSes/distros:. Note that at this time, only x86-64/amd64 architectures are fully supported. 32-bit x86 builds are also occasionally tested.

Find more information at: