augustus | AUGUSTUS v3.2.1 for installation on Mac OS X
kandi X-RAY | augustus Summary
kandi X-RAY | augustus Summary
AUGUSTUS v3.2.1 for installation on Mac OS X. AUGUSTUS v3.2.1 was downloaded from And the Makefiles were subsequently modifed so that it could compile and be functional on Mac OSX. The problem seems to be something in the ProteinProfile function, where if compiled with Mac clang++ it will throw an error everytime you try to use the proteinprofile method - thus Augustus won't work with BUSCO. The workaround is to use g++ v4.8 or greater, I install gcc using homebrew which will currently get you gcc-7, you can install with brew install gcc. The other major source of pain in this install is linking Bamtools correctly to the accessory scripts/programs in the auxprogs folder. The important point here seems to be (at least this is the only way I could get it to work) is to make sure that the same compiler that you build Bamtools v2.4.0 with, is also what you use to compile these accessory programs. To make this work, I added two variables to the make command to make sure you are aware of this and are specifiying the correct compiler.
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Lines of Code : 24License : Strong Copyleft (GPL-3.0)
Copy#first install Bamtools, compile with native Apple Clang compiler
wget https://github.com/pezmaster31/bamtools/archive/v2.4.0.tar.gz
tar -xzvf v2.4.0.tar.gz
cd bamtools-2.4.0
#now to make Cmake use Apple (in case you have other compilers which you m Community Discussions
Trending Discussions on augustus
QUESTION
I am looking for a way to access the li-elements between two specific heading-tags only (e.g.from 2nd h3 to 3rd h3 or from 3rd h3 to next h4) in order to create a table of historical events listed on https://de.wikipedia.org/wiki/1._Januar structured along the criteria mentioned in the headings.
A major problem (for me ...) is that - other than the h1-heading - the subtitles of the lower levels have no className or id.
ANSWER
Answered 2021-Feb-14 at 00:24Instead of using loops, you can just copy and paste the range at once.
QUESTION
After read the csv, I'm getting an unexpected output:
...ANSWER
Answered 2021-Feb-19 at 09:52Use sep instead of delimiter:
QUESTION
In a question asked earlier on stackoverflow I came to a correct javascript code. I then implemented this on my wordpress page (see: specific page).
Although the javascript code is loaded in the head (below the js code), it is not activated as soon as I reach the webpage.
...ANSWER
Answered 2021-Jan-03 at 22:49When you put it in the header and run, those codes may not be applicable because the Dom is not rendered yet. You may want to try wrapping your codes in the load event.
QUESTION
I want to localize the strings in a Blazor WebAssembly app, but I want to keep the date and number notation fixed to en-US. The problem is that when I set DefaultThreadCurrentUICulture (which should control the localized strings) to something else than DefaultThreadCurrentCulture (which should control the date and number) the localized strings from the resx files are no longer found. If I set both to the same value (thus e.g. both en-US or both nl-BE), everything works as expected.
Does anyone know how I can solve this? Is this a bug or am I missing something? Below is a part of my test code with comments about which combinations of CurrentUICulture and CurrentCulture work or not work. I put this code right at the start in the Main method.
...ANSWER
Answered 2020-Aug-26 at 00:31I am pretty sure this is a bug that is being addressed in .net5.0-preview8 - which should be out this week, hopefully!
https://github.com/dotnet/aspnetcore/issues/24174
EDIT: It seems I was wrong about this fixing your issue - it doesn't. From quick testing using aspnetcore 5 preview 8, it seems the only time localization works is if both currentculture and currentuiculture match.
QUESTION
I want to extract data from the following
...ANSWER
Answered 2020-Aug-10 at 15:30RegExp re = new RegExp("((?<=Sv-loon)([\\S\\s]*?)(?=Datum:))");
QUESTION
I would need help in order to extract part of a txt.file such as
...ANSWER
Answered 2020-Jul-03 at 11:41You can use regular expressions (module re). You have to capture all the text after # protein sequence = [
Try this code (this is just begining):
QUESTION
I have tried to work on a solution for the following: I have a .gff3 file for which I want to replace gene headers into a simplified name. Both the original gene headers and the new gene name are given in a separate file, with the original name in column 1 and the new name in column 2. How can I use sed (I think sed is most suitable here) to replace all occurences in the .gff3 file with the new shortened name in the second column?
Example lines .gff3 file:
...ANSWER
Answered 2020-Jun-22 at 14:34This does a full string match from after = to the end of -gene= on each line of .gff3 and should be orders of magnitude faster and more robust than what we had been doing previously since it only replaces the 1-3 strings actually found in each line of the original.gff3 file rather than trying to replace all 18,000+ strings that exist in the rename.txt file:
QUESTION
A simple multiple choice quiz with one problem I can't solve. At first When I clicked the 'next question' button the next question and answers didn't show only when clicked a second time the next question and answers showed. When I placed runningQuestion++ above questions[runningQuestion].displayAnswers() like I did in the nextQuestion function the initial problem is solved but reappears after the last question when you are asked to try again. Only now when you click 'try again' now ofcourse it skips the first question.
...ANSWER
Answered 2020-Jun-26 at 11:24The problem with the current version is that you reset runningQuestion to 0, and when clicking on the button, you execute nextQuestion, which, as the name implies, goes to the next question (runningQuestion++).
I see 2 ways of solving this. Either the "easy" way, by resetting runningQuestion to -1 so that it goes to 0:
QUESTION
For my school project I am trying to display a clock which refreshes hours/minutes/seconds in real time. i want to work with SetInterval or are it the wrong thoughts? Can anyone help me out?
...ANSWER
Answered 2020-May-14 at 16:06getActualFullDate() doesn't update the HTML, it just returns a string. The interval function needs to call .html().
QUESTION
Hel lo, I know how to use
...ANSWER
Answered 2020-May-06 at 11:45Here is necesary chain masks, not filtered rows, also are added () because priority of operators:
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