redmask | Genome assembly soft-masking using Red

by nextgenusfs Python Version: Current License: BSD-2-Clause

X-Ray Key Features Code Snippets Community Discussions(4)Vulnerabilities Install Support

kandi X-RAY | redmask Summary

redmask is a Python library. redmask has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However redmask build file is not available. You can download it from GitHub.

Genome assembly soft-masking using Red (Repeat Detector). Requires Red (REpeat Detector) software which you can get Install one of the pre-built binaries for your system or build from source. The Red executable needs to be in your $PATH.

Support

Quality

Security

License

Reuse

Support

redmask has a low active ecosystem.

It has 5 star(s) with 3 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 1 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of redmask is current.

Quality

redmask has 0 bugs and 0 code smells.

Security

redmask has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

redmask code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

redmask is licensed under the BSD-2-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

redmask releases are not available. You will need to build from source code and install.

redmask has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 194 lines of code, 9 functions and 1 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed redmask and discovered the below as its top functions. This is intended to give you an instant insight into redmask implemented functionality, and help decide if they suit your requirements.

Add masking stats to bedfile
Split a list into two groups
Calculate the number of nucleotide sequences
Safely remove a file or directory
Wrap a string

Get all kandi verified functions for this library.

redmask Key Features

No Key Features are available at this moment for redmask.

redmask Examples and Code Snippets

No Code Snippets are available at this moment for redmask.

Community Discussions

Trending Discussions on redmask

How to optimize blend by combining red and blue unsigned byte?

Sending 32bit integer from python script to arduino via serial for use in driving RGB strip

How to get rid of "Object 'object' can be disposed more than once in method"

How to read bmp file header in python?

QUESTION

How to optimize blend by combining red and blue unsigned byte?

Asked 2019-Sep-22 at 00:38

I have this function for RGB blend. What I'm trying to do is put red and blue together to lessen the operations.

Here' the original code :

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ANSWER

Answered 2019-Sep-21 at 23:07

The (REDMASK * (r >> 24)) type part in the original code handles clamping values that overflow. This works with one color part, but not two. You'll need to split that into two parts, one to handle the red overflow and one for the blue. Handling the overflow for red can be done as in the original, but the blue overflow needs a little adjustment to ignore any of the red contribution.

Source https://stackoverflow.com/questions/58044727

QUESTION

Sending 32bit integer from python script to arduino via serial for use in driving RGB strip

Asked 2019-Apr-14 at 08:50

first post so go easy on me.

I have made a python script which takes a screenshot of the current display and finds the most frequently reappearing RGB colour value.

I am attempting to send this to via serial to an arduino pro micro (with some supplementary components) to drive a 12v LED strip.

I am bit-shifting the individual red, green and blue values, and am adding them together into an unsigned 32 bit integer to be send to the arduino which will then use a bitmask to then get the original values back using PWM pins on the arduino control three MOSFETS (N-Channel) to drive the individual colours on the RGB strip. Each colour has 256 values so can be represented in 8bits seen below.

32bit unsigned int

un-used blue green red

00000000 00000000 00000000 00000000

red mask

00000000 00000000 00000000 11111111

green mask

00000000 00000000 11111111 00000000

blue mask

00000000 11111111 00000000 00000000

My issue is that the serial communication between the python script and the arduino doesn't appear to be working, and I cannot figure out why. Is it something to do with the format of the unsigned 32 bit integer I'm sending? I'm not really finding any information on the acceptable formats and have little experience using serial communications.

What I do know is that the arduino circuit is definitely connected correctly as I can fully drive the RGB strip by specifying values on the arduino side.

The python script is definitely connecting to the arduino as I am connecting using hardware information found in windows device manager when the arduino is connected, and while the script is running I cannot use anything else to connect to the COM port used by the arduino.

The python script is calculating and formatting the values as I intend as I can simply print them to console instead of writing to serial to confirm.

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ANSWER

Answered 2019-Apr-14 at 08:50

I've written and tested my watered down communication solution for your case on python27 and arduino Uno but should give you more or less the same results. Test it and let me know if you need clarification or get stuck at some point.

Source https://stackoverflow.com/questions/55667334

QUESTION

How to get rid of "Object 'object' can be disposed more than once in method"

Asked 2019-Jan-15 at 13:26

I am analyzing the code using Visual Studio tool and I get this message:

Object 'FileStream' can be disposed more than once in method 'BitmapFormat.WriteBitmap(byte[], int, int)'. To avoid generating a System.ObjectDisposedException you should not call Dispose more than one time on an object.

I tried to called disposed explicitly on the object but no avail.

This is the method:

...

ANSWER

Answered 2019-Jan-15 at 13:21

Try to get rid off this line. You call dispose in finally block which will ALWAYS run. So you can delete this line.

Source https://stackoverflow.com/questions/54199608

QUESTION

How to read bmp file header in python?

Asked 2017-Oct-29 at 20:47

I need to read the header of a bmp file with python. I tried like this but it obviously returns just a bunch of non intelligible bytes:

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ANSWER

Answered 2017-Oct-29 at 20:43

You can use the imghdr module (which is in the python stdlib):

Source https://stackoverflow.com/questions/47003833

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install redmask

You can download it from GitHub.
You can use redmask like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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