kmer-db | efficient tool for estimating evolutionary distances

by refresh-bio C++ Version: v1.7.6 License: GPL-3.0

X-Ray Key Features Code Snippets(2)Community Discussions Vulnerabilities Install Support

kandi X-RAY | kmer-db Summary

kmer-db is a C++ library. kmer-db has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Kmer-db is a fast and memory-efficient tool for estimating evolutionary distances.

Support

Quality

Security

License

Reuse

Support

kmer-db has a low active ecosystem.

It has 47 star(s) with 11 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 6 open issues and 7 have been closed. On average issues are closed in 17 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of kmer-db is v1.7.6

Quality

kmer-db has no bugs reported.

Security

kmer-db has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

kmer-db is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

kmer-db releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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kmer-db Key Features

No Key Features are available at this moment for kmer-db.

kmer-db Examples and Code Snippets

3. Examples

C++

Lines of Code : 16

License : Strong Copyleft (GPL-3.0)

Copy

acinetobacter
klebsiella
e.coli
...

kmer-db build -k 20 pathogens.list pathogens.db
kmer-db all2all pathogens.db matrix.csv
kmer-db distance matrix.csv

kmer-db build -k 20 -f 0.1 pathogens.list pathogens.db
kmer-db all2all pathogens.db matrix.csv
k

1. Installation

C++

Lines of Code : 1

License : Strong Copyleft (GPL-3.0)

Copy

conda install -c bioconda kmer-db

Community Discussions

No Community Discussions are available at this moment for kmer-db.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install kmer-db

Kmer-db comes with a set of precompiled binaries for Linux, OS X, and Windows. The software is also available on Bioconda:.
MAKE project (G++ 4.8.5 tested) for Linux and OS X,
Visual Studio 2015 solution for Windows.

Support

Kmer-db, by default, takes advantage of AVX (required) and AVX2 (optional) CPU extensions. The pre-built binary determines supported instructions at runtime, thus it is multiplatform. When compiling the sources under Linux and OS X, the support of AVX2 is also established automatically. Under Windows, the program is by default built with AVX2 instructions. To prevent this, Kmer-db must be compiled with NO_AVX2 symbolic constant defined.

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