KMC | Fast and frugal disk based k-mer counter | Genomics library

 by   refresh-bio C++ Version: v3.2.2 License: No License

kandi X-RAY | KMC Summary

kandi X-RAY | KMC Summary

KMC is a C++ library typically used in Artificial Intelligence, Genomics applications. KMC has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

kmc = [bioconda downloads] kmc is a disk-based programm for counting k-mers from (possibly gzipped) fastq/fasta files. the homepage of the kmc project is for accessing k-mers stored in database produced by kmc there is an api (kmc_api directory). note that for kmc versions 0.x and 1.x dababase format differs from produced by kmc version 2.x. from version 2.2.0 api is unified for both formats and all new features/bug fixes are present only for 2.x branch (standalone api for older kmc version is not longer under development, so new version of api should be used even for databases produced by older kmc version). installation = the following libraries come with kmc in a binary (64-bit compiled for x86 platform) form. if your system needs other binary formats, you should put
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            kandi-support Support

              KMC has a low active ecosystem.
              It has 203 star(s) with 62 fork(s). There are 9 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 78 open issues and 112 have been closed. On average issues are closed in 132 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of KMC is v3.2.2

            kandi-Quality Quality

              KMC has no bugs reported.

            kandi-Security Security

              KMC has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              KMC does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              KMC releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

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            KMC Key Features

            No Key Features are available at this moment for KMC.

            KMC Examples and Code Snippets

            No Code Snippets are available at this moment for KMC.

            Community Discussions

            QUESTION

            Flutter text overflow on column widget
            Asked 2021-Jan-11 at 08:54

            I am using row widget in which i am showing text in a column. But issue is its overflow the width of text.

            My code

            ...

            ANSWER

            Answered 2021-Jan-11 at 08:54

            you can wrap all the childrens of your Row in Flexible or Expanded widgets.
            Here's a preview:

            You can access the preview and code here

            Source https://stackoverflow.com/questions/65656774

            QUESTION

            Multi page eBay storefront web scrape [vba]
            Asked 2020-Jan-26 at 09:32

            Cross posted here: https://www.mrexcel.com/board/threads/storefront-web-scraping.1120494/#post-5403849

            Hello everyone. I'm having trouble creating a webscraper in VBA that can handle the below. So basically i need to scrape my webstore https://www.ebay.com/str/customwheelandperformancedepot?_pgn=1 into excel.

            i need to go through all available pages ( found at the bottom ) and open each listing. Now once the listing has been opened we need to determine if its a wheel or a wheel & tire package to do this we can look in the "Item Specifics" table; if any of the item specifics contains the phrases "tire", "section width", or "aspect ratio" its a wheel and tire package.

            example of wheel: https://www.ebay.com/itm/Set-of-4-16x8-Mo970-Black-Machine-8x165-1-Wheels-Rims-SILVERADO-2500/283545274424?epid=1540162229&hash=item42049d8838:g:dZgAAOSw5wVdJ2~0

            example of wheel & tire package: https://www.ebay.com/itm/HELO-HE878-17x9-Wheels-Rims-33-FUEL-AT-Tires-Package-5x5-Jeep-Wrangler-JK-JL/372571036378?hash=item56bef6dada:g:AhkAAOSw2~NcQO35

            For wheel & tire packages i only need the:

            1. Title [#itemTitle]

            3. Price [#mm-saleOrgPrc] if unavailable [#prcIsum]

            4. Ebay Item Number [#descItemNumber]

            5. HTML Inner of the description [#ds_div]

            For wheel only listings i need:

            1. Title [#itemTitle]

            2. Price [#mm-saleOrgPrc] if unavailable [#prcIsum]

            3. Ebay Item Number [#descItemNumber]

            4. Item specifics table [.section > table:nth-child(2) > tbody:nth-child(1)]

            6. HTML Inner of Description [#container]

            **note that the item specifics table may not be in order and may be missing some of the values (such as bolt pattern 2). The header values are in columns 1 and 3 (Condition, backspacing, offset, etc) and the actual values to put into the excel sheet are in columns 2 and 4 (New, 4.5, 0, etc)

            Here is the result i'm going for with 3 examples of wheel only followed by 3 examples of wheel and tire packages.

            this is what i have so far as i do not know how to access multiple pages i attempted to scrape just the title from one listing, and it seems i am struggling with even that.

            ...

            ANSWER

            Answered 2020-Jan-26 at 09:32

            I realise you've asked this two weeks ago, but maybe you're still looking for an answer.

            At the time of writing, I think the code below is working for me. I say at the time of writing because I get the impression that some of the ids (in the HTML received from the server) are changing periodically -- which breaks the code.

            This is what I've currently got:

            The code is a bit of a mess, feel free to refactor. The entry point is ScrapeAllItemsFromEbayShop.

            Source https://stackoverflow.com/questions/59771416

            QUESTION

            Iterating over different functions with different number of parameters in Julia
            Asked 2019-Dec-25 at 05:39

            I'm trying to run a loop over different functions with different number of arguments. The variables are created at runtime inside the loop, and I want to use eval at each iteration to instantiate a Struct using the variable :symbol. However, I can't do this since eval only works in the global scope. This is the MWE for the case that works:

            ...

            ANSWER

            Answered 2019-Dec-25 at 05:39

            Here's an approach using multiple dispatch rather than eval:

            Source https://stackoverflow.com/questions/59473668

            QUESTION

            How to fix 'if bool' statement from an read file def
            Asked 2019-Nov-12 at 12:03

            So I try to make an app to help a friend on day by day job and I created a settings and language to be more easy to change around some app properties and both of them have same idea of reading some text file but one is work and other one not :(

            I tried to delete tabs title translations and is work, but when I place them back the language.py will not want to work.

            Reading the language file is not working

            ...

            ANSWER

            Answered 2019-Nov-12 at 12:03

            as described in my comment your issue is that you are using readable() instead of readline(). readable returns a boolean of True or False which makes l a boolean type which is why the next time you do "=" in l you get this error. However looking at your code you are setting several sepcific variables. in order to make this scalable and dynamic you would be better to store your settings in a hash. that way if you add new settings in the file you dont need to update your code to load them in to a variable. they will automatically be loaded into the hash. Something like the below as an example of a more dynamic way to handle this.

            Source https://stackoverflow.com/questions/58817843

            QUESTION

            python dataframe matching with list items
            Asked 2019-Nov-05 at 11:49

            Have a dataframe df containing column (A) as below A

            ...

            ANSWER

            Answered 2019-Nov-05 at 11:34

            Try this:

            Contents of df before matching: (shows input df)

            Source https://stackoverflow.com/questions/58709581

            QUESTION

            Load checked checkbox and calculate them
            Asked 2019-Apr-09 at 08:20

            I need to make that by changing the dataFim field or clicking on the radio button Arrival it is recalculated the RATES AND SERVICES.

            See my code below. In this other link of the to see better all the field: https://jsfiddle.net/yormgb5j/1/

            Thank you very much.

            ...

            ANSWER

            Answered 2019-Apr-09 at 08:20

            Changes: Add event into change function and track event is bubble or not (property change with client click or default set in HTML tag).

            Query: In uncheck logic minus total amount with multiply by number of days instead of quantity.

            Edit: Get total value (amount * Qty) from html table which is related to checkbox (i.e unchecked checkbox).

            Edit 2: Change method to get total amount and simplify var Qty = $("#abc tr:contains('"+$(this).attr('title')+"') .tTotal").text(); . Edited snippet working properly.

            Edit 3: Change Id generating Logic var quantity = eval($("table[id^=tabelaIE]:last").attr('id').replace("tabelaIE","0"))+1.

            Edit 4: Change for New checkbox Output and Active Recalculations.

            Source https://stackoverflow.com/questions/55376019

            QUESTION

            Dynamically Change Form Action Based on Selection Using jQuery - problem with default submission
            Asked 2019-Feb-19 at 16:21

            I have simple form with email options field. I wanted to do Dynamically Change Form Action Based on Selection Using jQuery and it works fine.

            The only problem is that if you do not select with click one of options 'Motoristi' / 'Navtika' nothing happens. I want default action to work.

            ...

            ANSWER

            Answered 2019-Feb-19 at 08:05

            Your switch / case is only executed if a user clicks change the dropdown. If the dropdown won't be changed, nothing happens.

            Just add the form default action straight to your form and replace it, if a user change the select.

            Source https://stackoverflow.com/questions/54761243

            QUESTION

            Use a user input value instead of a parameter
            Asked 2019-Jan-09 at 16:55

            I have this function which works perfectly while I enter parameters, but it's not what I need, so given the code below, how can I use a user input value instead of the parameter to search through the array and return the objects? Please keep it as simple as possible,I'm new to javaScript. Please include input and button as html fields as well.

            ...

            ANSWER

            Answered 2019-Jan-09 at 16:55

            Your input html looks fine to me. You should add a button which would look something like .

            Now, You'll want to add a click event listener to the button. This is basically a function that will be called whenever the button is clicked. There's a couple ways of adding the event listener but I think the best is

            Source https://stackoverflow.com/questions/54114656

            QUESTION

            Return list of properties using ng-repeat (AngularJS)
            Asked 2018-Jul-20 at 14:58

            I am trying to convert a working JavaScript/Jquery feature to AngularJS (1.0) so I can add it to a fairly large AngularJS application. I am having some issues getting data to the view using ng-repeat and not sure where my issue is. I was reading through $index documentation and not sure if this is the source of my issue or what I need to do. Also not getting anything in the console for the response.data.deviceList object.

            Possible I have a few issues going on here.

            HTML

            ...

            ANSWER

            Answered 2018-Jul-20 at 14:58

            You are declaring the controller inside the ng-repeat (which is incorrect, you need only one controller instance for handling the entire collection, and not one (controller) instance for every element in the collection), so change

            this

            to

            and this

            to this

            Also, you misplaced the error callback...see below working sample (mocked data)

            Source https://stackoverflow.com/questions/51431764

            QUESTION

            Angular JS - Iterate through properties of multiple objects
            Asked 2018-Jul-18 at 18:49

            I am trying to use AngularJS (1.0) to iterate through properties of multiple objects and return each data set for each object as an unordered list. I was successful creating this using straight JQuery and JavaScript, but unfortunately, this needs to integrate into a rather large AngularJS application. Here's what I have for HTML, JSON, and JavaScript at the moment. Any help would be much appreciated:

            JavaScript (mainScripts.js)

            ...

            ANSWER

            Answered 2018-Jul-18 at 18:49

            Firstly in the successCallback you cannot directly use deviceList from the callback response. The reponse is returned in predefined object where "data" is one of the property inside this object.You need to change mainScripts.js as below. Now you should not get undefined.

            Source https://stackoverflow.com/questions/51408185

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install KMC

            You can download it from GitHub.

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            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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