8 best Java Genomics libraries in 2025
by marketing.admin@openweaver.com Updated: Feb 1, 2023
Guide Kit
Java is the programming language created by Sun Microsystems. Java is a popular choice for many bioinformatics projects due to its platform independence and versatility. It is one of the most popular coding languages in the world. There are many Java Genomics libraries available in the market. Java has always been one of the best programming languages for bioinformatics research. These powerful tools can help us to do everything from writing more efficient code to distributing the code across the internet. The world of genomics is growing at an astonishing pace. It provides a library of algorithms and data structures for working with biological data in Java. Some of the most popular Java Genomics Open Source libraries among developers are: igv - Integrative Genomics Viewer; cbioportal - cBioPortal for Cancer Genomics; gridss - GRIDSS: the Genomic Rearrangement IDentification Software Suite.
igvby igvteam
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
igvby igvteam
Java
547
Version:Current
License: Permissive (MIT)
cbioportalby cBioPortal
cBioPortal for Cancer Genomics
cbioportalby cBioPortal
Java
470
Version:v5.3.9
License: Strong Copyleft (AGPL-3.0)
gridssby PapenfussLab
GRIDSS: the Genomic Rearrangement IDentification Software Suite
gridssby PapenfussLab
Java
221
Version:v2.13.2
License: Others (Non-SPDX)
ASCIIGenomeby dariober
Text Only Genome Viewer!
Artemisby sanger-pathogens
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Artemisby sanger-pathogens
Java
161
Version:v18.2.0
License: Others (Non-SPDX)
opencgaby opencb
An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
opencgaby opencb
Java
156
Version:v2.9.0
License: Permissive (Apache-2.0)
cloud-pipelineby epam
Cloud agnostic genomics analysis, scientific computation and storage platform
cloud-pipelineby epam
Java
124
Version:Current
License: Permissive (Apache-2.0)