8 best Java Genomics libraries in 2024

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by marketing.admin@openweaver.com dot icon Updated: Feb 1, 2023

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Java is the programming language created by Sun Microsystems. Java is a popular choice for many bioinformatics projects due to its platform independence and versatility. It is one of the most popular coding languages in the world. There are many Java Genomics libraries available in the market. Java has always been one of the best programming languages for bioinformatics research. These powerful tools can help us to do everything from writing more efficient code to distributing the code across the internet. The world of genomics is growing at an astonishing pace. It provides a library of algorithms and data structures for working with biological data in Java. Some of the most popular Java Genomics Open Source libraries among developers are: igv - Integrative Genomics Viewer; cbioportal - cBioPortal for Cancer Genomics; gridss - GRIDSS: the Genomic Rearrangement IDentification Software Suite.

igvby igvteam

Java doticonstar image 547 doticonVersion:Currentdoticon
License: Permissive (MIT)

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

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            igvby igvteam

            Java doticon star image 547 doticonVersion:Currentdoticon License: Permissive (MIT)

            Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
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                      cbioportalby cBioPortal

                      Java doticonstar image 470 doticonVersion:v5.3.9doticon
                      License: Strong Copyleft (AGPL-3.0)

                      cBioPortal for Cancer Genomics

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                                cbioportalby cBioPortal

                                Java doticon star image 470 doticonVersion:v5.3.9doticon License: Strong Copyleft (AGPL-3.0)

                                cBioPortal for Cancer Genomics
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                                          jvarkitby lindenb

                                          Java doticonstar image 416 doticonVersion:2021.10.13doticon
                                          License: Others (Non-SPDX)

                                          Java utilities for Bioinformatics

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                                                    jvarkitby lindenb

                                                    Java doticon star image 416 doticonVersion:2021.10.13doticon License: Others (Non-SPDX)

                                                    Java utilities for Bioinformatics
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                                                              gridssby PapenfussLab

                                                              Java doticonstar image 221 doticonVersion:v2.13.2doticon
                                                              License: Others (Non-SPDX)

                                                              GRIDSS: the Genomic Rearrangement IDentification Software Suite

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                                                                        gridssby PapenfussLab

                                                                        Java doticon star image 221 doticonVersion:v2.13.2doticon License: Others (Non-SPDX)

                                                                        GRIDSS: the Genomic Rearrangement IDentification Software Suite
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                                                                                  ASCIIGenomeby dariober

                                                                                  Java doticonstar image 174 doticonVersion:v1.16.0doticon
                                                                                  License: Permissive (MIT)

                                                                                  Text Only Genome Viewer!

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                                                                                            ASCIIGenomeby dariober

                                                                                            Java doticon star image 174 doticonVersion:v1.16.0doticon License: Permissive (MIT)

                                                                                            Text Only Genome Viewer!
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                                                                                                      Artemisby sanger-pathogens

                                                                                                      Java doticonstar image 161 doticonVersion:v18.2.0doticon
                                                                                                      License: Others (Non-SPDX)

                                                                                                      Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

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                                                                                                                Artemisby sanger-pathogens

                                                                                                                Java doticon star image 161 doticonVersion:v18.2.0doticon License: Others (Non-SPDX)

                                                                                                                Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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                                                                                                                          opencgaby opencb

                                                                                                                          Java doticonstar image 156 doticonVersion:v2.9.0doticon
                                                                                                                          License: Permissive (Apache-2.0)

                                                                                                                          An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

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                                                                                                                                    opencgaby opencb

                                                                                                                                    Java doticon star image 156 doticonVersion:v2.9.0doticon License: Permissive (Apache-2.0)

                                                                                                                                    An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
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                                                                                                                                              Java doticonstar image 124 doticonVersion:Currentdoticon
                                                                                                                                              License: Permissive (Apache-2.0)

                                                                                                                                              Cloud agnostic genomics analysis, scientific computation and storage platform

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                                                                                                                                                        cloud-pipelineby epam

                                                                                                                                                        Java doticon star image 124 doticonVersion:Currentdoticon License: Permissive (Apache-2.0)

                                                                                                                                                        Cloud agnostic genomics analysis, scientific computation and storage platform
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