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8 best Java Genomics libraries in 2022

by Open Weaver kits ✔ Updated: May 13, 2022

Java is the programming language created by Sun Microsystems. Java is a popular choice for many bioinformatics projects due to its platform independence and versatility. It is one of the most popular coding languages in the world. There are many Java Genomics libraries available in the market. Java has always been one of the best programming languages for bioinformatics research. These powerful tools can help us to do everything from writing more efficient code to distributing the code across the internet. The world of genomics is growing at an astonishing pace. It provides a library of algorithms and data structures for working with biological data in Java. Some of the most popular Java Genomics Open Source libraries among developers are: igv - Integrative Genomics Viewer; cbioportal - cBioPortal for Cancer Genomics; gridss - GRIDSS: the Genomic Rearrangement IDentification Software Suite.

igvby igvteam

Java star image 524 Version:Current

License: Permissive (MIT)

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

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igvby igvteam

Java star image 524 Version:Current License: Permissive (MIT)

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
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cbioportalby cBioPortal

Java star image 448 Version:v5.2.6

License: Strong Copyleft (AGPL-3.0)

cBioPortal for Cancer Genomics

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cbioportalby cBioPortal

Java star image 448 Version:v5.2.6 License: Strong Copyleft (AGPL-3.0)

cBioPortal for Cancer Genomics
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jvarkitby lindenb

Java star image 393 Version:2021.10.13

License: Others (Non-SPDX)

Java utilities for Bioinformatics

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jvarkitby lindenb

Java star image 393 Version:2021.10.13 License: Others (Non-SPDX)

Java utilities for Bioinformatics
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gridssby PapenfussLab

Java star image 174 Version:v2.13.2

License: Others (Non-SPDX)

GRIDSS: the Genomic Rearrangement IDentification Software Suite

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gridssby PapenfussLab

Java star image 174 Version:v2.13.2 License: Others (Non-SPDX)

GRIDSS: the Genomic Rearrangement IDentification Software Suite
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ASCIIGenomeby dariober

Java star image 174 Version:v1.16.0

License: Permissive (MIT)

Text Only Genome Viewer!

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ASCIIGenomeby dariober

Java star image 174 Version:v1.16.0 License: Permissive (MIT)

Text Only Genome Viewer!
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Artemisby sanger-pathogens

Java star image 161 Version:v18.2.0

License: Others (Non-SPDX)

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

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Artemisby sanger-pathogens

Java star image 161 Version:v18.2.0 License: Others (Non-SPDX)

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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opencgaby opencb

Java star image 152 Version:2.4.12

License: Permissive (Apache-2.0)

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

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opencgaby opencb

Java star image 152 Version:2.4.12 License: Permissive (Apache-2.0)

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
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cloud-pipelineby epam

Java star image 121 Version:Current

License: Permissive (Apache-2.0)

Cloud agnostic genomics analysis, scientific computation and storage platform

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cloud-pipelineby epam

Java star image 121 Version:Current License: Permissive (Apache-2.0)

Cloud agnostic genomics analysis, scientific computation and storage platform
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