gridss | GRIDSS : the Genomic Rearrangement IDentification Software | Genomics library

 by   PapenfussLab Java Version: v2.13.2 License: Non-SPDX

kandi X-RAY | gridss Summary

kandi X-RAY | gridss Summary

gridss is a Java library typically used in Artificial Intelligence, Genomics applications. gridss has no bugs, it has no vulnerabilities, it has build file available and it has low support. However gridss has a Non-SPDX License. You can download it from GitHub.

GRIDSS: the Genomic Rearrangement IDentification Software Suite

            kandi-support Support

              gridss has a low active ecosystem.
              It has 221 star(s) with 69 fork(s). There are 24 watchers for this library.
              It had no major release in the last 12 months.
              There are 55 open issues and 550 have been closed. On average issues are closed in 39 days. There are 6 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of gridss is v2.13.2

            kandi-Quality Quality

              gridss has 0 bugs and 0 code smells.

            kandi-Security Security

              gridss has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              gridss code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              gridss has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              gridss releases are available to install and integrate.
              Build file is available. You can build the component from source.
              gridss saves you 58576 person hours of effort in developing the same functionality from scratch.
              It has 67728 lines of code, 5817 functions and 650 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed gridss and discovered the below as its top functions. This is intended to give you an instant insight into gridss implemented functionality, and help decide if they suit your requirements.
            • Write the object to output stream
            • Converts a base - encoded base byte to its compressed representation
            • Converts a byte to a compressed ny - byte representation
            • Converts the byte array into a compressed byte array
            • Executes the analysis
            • Cleans a reference sequence
            • Count the hits in the given sequence
            • Checks to see if there is enough data to read
            • Creates a summary line
            • Execute the analysis
            • Read all reads
            • Initialize the input file
            • Tries to traverse a path using the given parameters
            • This method is used to calculate the non - overlapping set of SAX tags
            • Writes the variables
            • Converts VCF configuration to breakpointNotation at the moment
            • Exports the loaded graph to a file
            • Main entry point
            • Sets the local language - neutral locale
            • Extract other other canonical alignments from a SAM record
            • Export the overlapping overlap string
            • Re - align the given SAMRecord to a window
            • Exports the overlap string into a file
            • Initialize the language file
            • Initializes the file
            • Generates a subgraph for the given seed
            Get all kandi verified functions for this library.

            gridss Key Features

            No Key Features are available at this moment for gridss.

            gridss Examples and Code Snippets

            No Code Snippets are available at this moment for gridss.

            Community Discussions


            Trouble with refering to a variable in mouseover event
            Asked 2018-Feb-28 at 11:06

            I want to make an event where .gridss change colors with mouseover event. Problem is gridss comes out as not definied,and if i try to move the mouseover event into the the gridss function it also does not work. So how can I successfully refer to .gridds?

            My question is pretty simple yet i cant seem to get it right,so thanks in advance.



            Answered 2018-Feb-28 at 11:06

            Use jQuery for events if you are using jQuery. I assume that you are not aware of mouseout or mouseleave because it looks like you are using setTimeout() to trigger a delay of text color reverting back to original color. I used mouseenter and mouseleave which are similar to mouseover and mouseout events.

            You had an error which that gridss wasn't defined. The reason why moving in and out of functions didn't work is because you defined gridss with let.

            • let is limited scope to that of the block

            • var scope is the function which works as long as you have gridss in the function.



            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install gridss

            You can download it from GitHub.
            You can use gridss like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the gridss component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer For Gradle installation, please refer .


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • CLI

            gh repo clone PapenfussLab/gridss

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