socrates | Jan Schröder , Arthur Hsu
kandi X-RAY | socrates Summary
kandi X-RAY | socrates Summary
Authors: Jan Schröder, Arthur Hsu, Anthony T Papenfuss Date: 11.09.2015. SOCRATES is a SV predictor that uses split reads to find breakpoints. It is optimized to be fast and extremely sensitive. SOCRATES is especially useful when you have some prior knowledge or hints about where the breakpoints are. The output may take a bit of filtering otherwise. If you are interested in more prioritization of SVs, GRIDSS (may be of interest.
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Top functions reviewed by kandi - BETA
- Command line parser
- Assigns BAM to the output BAM file
- Sets a list of regions for the given regions
- Run the specified tasks
- Read the BAM file
- Get the initial insert stats for an anchor point
- Gets the span count for a read in the BAM file
- Reads bytes from memory
- Reads a single page
- Demonstrates how to use the Re - Alignment BAM file
- Extract soft clipping info from the sequence
- Sets the unique values
- Set the unique end intervals
- Call samRecord
- Read the mean and scale bounds from a metric file
- Writes BAM data to an output file
- Determines if the specified samRecord is an anomalous pair
- Command entry point
- Generate the header for a fast sequence
- Main entry point for testing
- Calculate consensus sequence
- Extracts the int v from a string
- Main entry point
- Extracts the aligned seq info from the specified sequence
- Finds the index file for a given BAM file
- Calculates the identity of the samRecord
socrates Key Features
socrates Examples and Code Snippets
Community Discussions
Trending Discussions on socrates
QUESTION
I need to download the first paragraph of every article in every major widely spoken language wikipedia is available. Preferably, in plain text with no formatting.
I found this URL:
Unfortunately, I had to know the title of every article. So, I figured I could use pageid instead:
Start with pageids=0 and increment until pageids=INT_MAX.
For a different widely spoken language like German I can simply change the domain to de:
The final URL is:
https://%LLD%.wikipedia.org/w/api.php?action=query&format=json&pageids=%PAGE_ID%&prop=extracts&exintro&explaintext
Where
LLD = Low level domain of the country
PAGE_ID = Integer
I can't make sense of data dumps and this is the simplest way I found to do the job. Since, I really don't want to get my IP banned after say 10,000 articles, how frequent should I crawl for a different PAGE_ID?
I need a metric so it can be as performant as possible.
MAJOR EDIT
There is no hard and fast limit on read requests, but we ask that you be considerate and try not to take a site down. Most sysadmins reserve the right to unceremoniously block you if you do endanger the stability of their site.
If you make your requests in series rather than in parallel (i.e. wait for the one request to finish before sending a new request, such that you're never making more than one request at the same time), then you should definitely be fine. Also try to combine things into one request where you can (e.g. use multiple titles in a titles parameter instead of making a new request for each title
API FAQ states you can retrieve 50 pages per API request.
For crawling a total of 70,000,000 pageids in series of 50 pageids once every X amount of time it will take:
(70,000,00 / 50) * 200ms = 3 days
(70,000,00 / 50) * 500ms = 8 days
(70,000,00 / 50) * 1sec = 16 days
Will I definitely be fine even if choose once every 200ms?
...ANSWER
Answered 2021-May-27 at 12:23I wouldn't use the URL itself, but rather the Open Graph Tags in the Header of each page. Wikipedia has tags for og:title, og:image, and og:type. If you need assistance with Open Graph Protocol refer to https://ogp.me/. As for your IP ban I wouldn't really worry too much. Wikipedia is used by millions of people and unless you are using bots to do malicious activity the likely hood of getting banned is slim.
QUESTION
Can someone please help me understand this?
Let us have this DataFrame:
...ANSWER
Answered 2021-May-12 at 09:32I don't think how apply is used, you can use merge however:
QUESTION
I have a list of tuple like this: List ws= new List>();
I get output like this:
...ANSWER
Answered 2021-Apr-20 at 21:12You can do this:
QUESTION
Sorry if this has been answered previously; I've dug around but can't find it. I'm using the Materialize sidenav by calling M.AutoInit() which works for me until I try putting it in a separate Javascript file. I've been able to set up my footer this way so I don't have repeat code, but this doesn't seem to work for the sidenav. The sidenav shows up but the collapsible part will not open.
I think the problem is it doesn't like calling the collapsible part from HTML that is being inserted dynamically. But I tried separating out the collapsible portion (using 2 different querySelectors) which did not work either. If I were to put at least part of the sidenav back into my HTML page, it would defeat the purpose of me doing this.
Any thoughts or solutions? Thanks for looking at it!
...ANSWER
Answered 2021-Apr-19 at 11:16Initialisation is a one time thing - it scans the document for the matching selector, and runs the initialisation on it. So, always run the initialisation AFTER any dynamic content is added. If you add stuff on the fly, just run the init again.
QUESTION
Why is it that setting either display:none or content:none on the ::after element in these blockquotes causes the ::before element to be half-hidden, except in the first element for some reason? You can see in the snippet that display:none is set on the ::after pseudoelement and if you remove it the quotes show up properly.
ANSWER
Answered 2020-Nov-09 at 21:53It seems to have something to do with the behavior of the open-quote and close-quote, which you are applying to :after and :before.
If you do want an open-quote, but NOT close-quote. You simply need to add no-close-quote instead.
Just like this:
QUESTION
In this code two keys "39" are same name but different values , I want to print both keys
...ANSWER
Answered 2020-Sep-30 at 11:44Two keys cannot be the same. One will overwrite the other. If you want to have multiple values for one key then you need to design your data structure to support that (e.g. by having the value be an arrayref).
Your error messages are unrelated to that problem (you forgot to put quotes around your string values).
QUESTION
For humans, it's very natural to make higher-order statements. For example, you could state the following (with pseudo-Prolog syntax):
Socrates is smart:
...ANSWER
Answered 2020-Sep-14 at 06:58This is called modal logic, and is theorized with Kripke semantics. Here are some libraries in python.
QUESTION
I want to try and return a single object within my JSON response.
This is the response which I get and I want the app to display just the film name rather than everything. I want it to return just the name e.g "Casino" not "film_name": "Casino".
ANSWER
Answered 2020-Jun-03 at 12:49you'll definitely want to spend some time looking at the AsyncTask https://developer.android.com/reference/android/os/AsyncTaskdocumentation to get an understanding how it works. Honestly, most of your time will be spent reading API docs for the rest of your development life - also be aware that AsyncTask is deprecated.
One of the most confusing things is, you're looking up a LIST of films, but only setting ONE title to the text view, so something is up design wise that you want to look into.
But since you have the JSON and you need to get films, you probably want to set something up like this:
QUESTION
Hello All^^ I apologize if this has been asked previously (though I was unable to find a previously posted, similar question myself...). Also, let me apologize for the simplicity of this question, beforehand.
This is a simple browser game similar to wheel of fortune. A random quote is generated via js script which the user is supposed to guess via the onscreen keyboard keys. However, I am unable to compare the user click to that of the quote text content, at current; it is returning "undefined".
I understand (after reading some of the questions on here) that the reason why document.querySelectorAll('.letters') is returning "undefined" is because it is an array, and likely requires a forEach loop, rather than a for loop.
However, is there a way to augment this for loop to compare the button click event target value to that of the document.querySelectorAll('.letters') array value? If not, how would I write this as a for each loop? I have tried to re-write it as such for the last hour or so with no luck : /
Is it not possible to include this in a function with an event listener?
I do appreciate your time.
link to repo on github( https://github.com/shonb6570/Tech-Degree-Project-6/settings ).
problem code:
...ANSWER
Answered 2020-Feb-28 at 19:49Fixed. StackSlave was correct. A for/of loop was what was required to iterate through the array.
QUESTION
Suppose we have the following program:
...ANSWER
Answered 2018-Oct-24 at 07:36Suppose I write instead:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install socrates
You can use socrates like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the socrates component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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