ASCIIGenome | Text Only Genome Viewer | Command Line Interface library

by dariober Java Version: v1.16.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | ASCIIGenome Summary

ASCIIGenome is a Java library typically used in Utilities, Command Line Interface applications. ASCIIGenome has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. However ASCIIGenome has 146 bugs. You can download it from GitHub.

Text Only Genome Viewer!

Support

Quality

Security

License

Reuse

Support

ASCIIGenome has a low active ecosystem.

It has 174 star(s) with 7 fork(s). There are 9 watchers for this library.

It had no major release in the last 12 months.

There are 17 open issues and 61 have been closed. On average issues are closed in 30 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ASCIIGenome is v1.16.0

Quality

ASCIIGenome has 146 bugs (53 blocker, 2 critical, 71 major, 20 minor) and 1951 code smells.

Security

ASCIIGenome has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ASCIIGenome code analysis shows 0 unresolved vulnerabilities.

There are 38 security hotspots that need review.

License

ASCIIGenome is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

ASCIIGenome releases are available to install and integrate.

Build file is available. You can build the component from source.

ASCIIGenome saves you 10703 person hours of effort in developing the same functionality from scratch.

It has 21724 lines of code, 1231 functions and 111 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed ASCIIGenome and discovered the below as its top functions. This is intended to give you an instant insight into ASCIIGenome implemented functionality, and help decide if they suit your requirements.

Main entry point for the fasta file
Convert xterm256 to RGB codes
Parses a list of commands to print the input
Replace AWK headers with the track format
Sort a file by column family
Returns a buffered reader for the given file or url
Creates a temporary database
Block and index the vcf file
Adds a line to the index
winsor 2
Print to console
Interface private
Adds a GTF record to the prepared statement
Add the current position to the bgzip file
Sanity check
Generate alternative allele for a variant context
Convert old format history file to yaml
Reads a sample format from a file
Returns a LinkedHashCodes of Xterm 256
Attempts to guess the track type from the file
Gets the consumable sequence as a string
Read interval feature from a GTF line
Get title
Collapse a list of values to a list of natural coordinates
Parses a string and returns the Genomics coordinates
Build a Methyl Locale from the specified reference sequence

Get all kandi verified functions for this library.

ASCIIGenome Key Features

No Key Features are available at this moment for ASCIIGenome.

ASCIIGenome Examples and Code Snippets

No Code Snippets are available at this moment for ASCIIGenome.

Community Discussions

Trending Discussions on ASCIIGenome

gradle build broken after dependency update

QUESTION

gradle build broken after dependency update

Asked 2020-Aug-24 at 08:01

I use gradle to build a java project (ASCIIGenome).

One of the dependencies of ASCIIGenome is a repository on github (htsjdk, as you can see is a fork with some changes of mine). The ASCIIGenome project builds fine if I use this commit of htsjdk in build.gradle:

...

ANSWER

Answered 2020-Aug-24 at 08:01

It turns out there is a bug in the .gitignore repository of htsjdk that caused some files to be ignored so the htsjdk dependency was broken. Fixing .gitignore fixed my problem.

Source https://stackoverflow.com/questions/63539191

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ASCIIGenome

You can download it from GitHub.
You can use ASCIIGenome like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the ASCIIGenome component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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