cbioportal | cBioPortal for Cancer Genomics | Genomics library

by cBioPortal Java Version: v5.3.9 License: AGPL-3.0

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | cbioportal Summary

cbioportal is a Java library typically used in Artificial Intelligence, Genomics applications. cbioportal has no bugs, it has build file available, it has a Strong Copyleft License and it has low support. However cbioportal has 1 vulnerabilities. You can download it from GitHub.

The cBioPortal for Cancer Genomics provides visualization, analysis, and download of large-scale cancer genomics data sets. For a short intro on cBioPortal, see these introductory slides. If you would like to know how to setup a private instance of the portal and/or get set up for developing, see the documentation. For details on contributing code changes via pull requests, see our Contributing document. If you are interested in coordinating the development of new features, please contact cbioportal@cbio.mskcc.org or reach out on

Support

Quality

Security

License

Reuse

Support

cbioportal has a low active ecosystem.

It has 470 star(s) with 372 fork(s). There are 49 watchers for this library.

It had no major release in the last 12 months.

There are 385 open issues and 5659 have been closed. On average issues are closed in 85 days. There are 17 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of cbioportal is v5.3.9

Quality

cbioportal has 0 bugs and 0 code smells.

Security

cbioportal has 1 vulnerability issues reported (0 critical, 1 high, 0 medium, 0 low).

cbioportal code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cbioportal is licensed under the AGPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

cbioportal releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed cbioportal and discovered the below as its top functions. This is intended to give you an instant insight into cbioportal implemented functionality, and help decide if they suit your requirements.

Handles a GET request
Generates a map with the suppression study information
Returns the number of gistic rows in the database
Get the number of mutsigs in the database
Fetches the clinical data density plot of a study
Convenience method to extract a list of sensitive outliers and a list of patient attributes
Fetches and returns all the relevant data for the given set of patient attributes and patient attributes
Prints the onco print specification
Call a method in the lexer
Compute the clinicalin plot data
Import resource definition data
Runs the program
Generate the heat map legend
Match tokens
Returns the two - - - - - - - - - - - - - - - - - - - - - - - true P - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - and - - - - test
Initialize the abbreviation map
Runs the analysis
Entry point for importing gene setsets data
Generates a new ExtendedMutation with default values
Runs the update
Creates and returns an instance of the DataNode
Retrieves the periodic plot of arial plot
Method write body
Import resource definitions
Write network to GraphML format
Demonstrates how to generate a mutation set

Get all kandi verified functions for this library.

cbioportal Key Features

No Key Features are available at this moment for cbioportal.

cbioportal Examples and Code Snippets

No Code Snippets are available at this moment for cbioportal.

Community Discussions

Trending Discussions on cbioportal

Webshot for cBioportal produces white image

QUESTION

Webshot for cBioportal produces white image

Asked 2020-Apr-28 at 12:32

PROBLEM: I'm trying to take a simple picture of https://www.cbioportal.org/ on webshot but it just produces a completely white png. It works for other websites. Is there something preventing webshot from accessing/ loading it in PhantomJS?

...

ANSWER

Answered 2020-Apr-28 at 12:32

Instead of using webshot, you should consider to try webshot2. See my detailed answer to the similar case.

The code:

Source https://stackoverflow.com/questions/60526098

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cbioportal

You can download it from GitHub.
You can use cbioportal like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the cbioportal component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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