cbioportal | cBioPortal for Cancer Genomics | Genomics library

 by   cBioPortal Java Version: v5.3.9 License: AGPL-3.0

kandi X-RAY | cbioportal Summary

kandi X-RAY | cbioportal Summary

cbioportal is a Java library typically used in Artificial Intelligence, Genomics applications. cbioportal has no bugs, it has build file available, it has a Strong Copyleft License and it has low support. However cbioportal has 1 vulnerabilities. You can download it from GitHub.

The cBioPortal for Cancer Genomics provides visualization, analysis, and download of large-scale cancer genomics data sets. For a short intro on cBioPortal, see these introductory slides. If you would like to know how to setup a private instance of the portal and/or get set up for developing, see the documentation. For details on contributing code changes via pull requests, see our Contributing document. If you are interested in coordinating the development of new features, please contact cbioportal@cbio.mskcc.org or reach out on

            kandi-support Support

              cbioportal has a low active ecosystem.
              It has 470 star(s) with 372 fork(s). There are 49 watchers for this library.
              There were 10 major release(s) in the last 12 months.
              There are 385 open issues and 5659 have been closed. On average issues are closed in 85 days. There are 17 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of cbioportal is v5.3.9

            kandi-Quality Quality

              cbioportal has 0 bugs and 0 code smells.

            kandi-Security Security

              cbioportal has 1 vulnerability issues reported (0 critical, 1 high, 0 medium, 0 low).
              cbioportal code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              cbioportal is licensed under the AGPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              cbioportal releases are available to install and integrate.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed cbioportal and discovered the below as its top functions. This is intended to give you an instant insight into cbioportal implemented functionality, and help decide if they suit your requirements.
            • Handles a GET request
            • Generates a map with the suppression study information
            • Returns the number of gistic rows in the database
            • Get the number of mutsigs in the database
            • Fetches the clinical data density plot of a study
            • Convenience method to extract a list of sensitive outliers and a list of patient attributes
            • Fetches and returns all the relevant data for the given set of patient attributes and patient attributes
            • Prints the onco print specification
            • Call a method in the lexer
            • Compute the clinicalin plot data
            • Import resource definition data
            • Runs the program
            • Generate the heat map legend
            • Match tokens
            • Returns the two - - - - - - - - - - - - - - - - - - - - - - - true P - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - and - - - - test
            • Initialize the abbreviation map
            • Runs the analysis
            • Entry point for importing gene setsets data
            • Generates a new ExtendedMutation with default values
            • Runs the update
            • Creates and returns an instance of the DataNode
            • Retrieves the periodic plot of arial plot
            • Method write body
            • Import resource definitions
            • Write network to GraphML format
            • Demonstrates how to generate a mutation set
            Get all kandi verified functions for this library.

            cbioportal Key Features

            No Key Features are available at this moment for cbioportal.

            cbioportal Examples and Code Snippets

            No Code Snippets are available at this moment for cbioportal.

            Community Discussions

            Trending Discussions on cbioportal


            Webshot for cBioportal produces white image
            Asked 2020-Apr-28 at 12:32

            PROBLEM: I'm trying to take a simple picture of https://www.cbioportal.org/ on webshot but it just produces a completely white png. It works for other websites. Is there something preventing webshot from accessing/ loading it in PhantomJS?



            Answered 2020-Apr-28 at 12:32

            Instead of using webshot, you should consider to try webshot2. See my detailed answer to the similar case.

            The code:

            Source https://stackoverflow.com/questions/60526098

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install cbioportal

            You can download it from GitHub.
            You can use cbioportal like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the cbioportal component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • CLI

            gh repo clone cBioPortal/cbioportal

          • sshUrl


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