cgdsr | Based API for accessing the MSKCC Cancer Genomics Data | Genomics library

by cBioPortal R Version: Current License: LGPL-3.0

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | cgdsr Summary

cgdsr is a R library typically used in Artificial Intelligence, Genomics applications. cgdsr has no bugs, it has no vulnerabilities, it has a Weak Copyleft License and it has low support. You can download it from GitHub.

The package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

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Quality

Security

License

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Support

cgdsr has a low active ecosystem.

It has 19 star(s) with 18 fork(s). There are 15 watchers for this library.

It had no major release in the last 6 months.

There are 8 open issues and 9 have been closed. On average issues are closed in 34 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of cgdsr is current.

Quality

cgdsr has no bugs reported.

Security

cgdsr has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

cgdsr is licensed under the LGPL-3.0 License. This license is Weak Copyleft.

Weak Copyleft licenses have some restrictions, but you can use them in commercial projects.

Reuse

cgdsr releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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cgdsr Key Features

No Key Features are available at this moment for cgdsr.

cgdsr Examples and Code Snippets

No Code Snippets are available at this moment for cgdsr.

Community Discussions

Trending Discussions on cgdsr

Save results of each for loop as new data frame

QUESTION

Save results of each for loop as new data frame

Asked 2017-Apr-21 at 13:42

This is my first post ever so apologies up front for any inconvienance.

I'm trying to extract RNAseq data from cBioPortal with their function getProfileData(). I want to call this function on each of elements of my list with parameters generated from element of this list. I included a library, example cancers and example genes that can be called by this function.

...

ANSWER

Answered 2017-Apr-21 at 13:42

You can use lapply to return a list of dataframes.

Source https://stackoverflow.com/questions/43544023

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cgdsr

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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