igv | Integrative Genomics Viewer | Genomics library

 by   igvteam Java Version: v2.16.1 License: MIT

kandi X-RAY | igv Summary

kandi X-RAY | igv Summary

igv is a Java library typically used in Artificial Intelligence, Genomics applications. igv has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Integrative Genomics Viewer - desktop genome visualization tool for Mac, Windows, and Linux.

            kandi-support Support

              igv has a low active ecosystem.
              It has 547 star(s) with 369 fork(s). There are 49 watchers for this library.
              It had no major release in the last 6 months.
              There are 103 open issues and 951 have been closed. On average issues are closed in 80 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of igv is v2.16.1

            kandi-Quality Quality

              igv has 0 bugs and 0 code smells.

            kandi-Security Security

              igv has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              igv code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              igv is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              igv releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed igv and discovered the below as its top functions. This is intended to give you an instant insight into igv implemented functionality, and help decide if they suit your requirements.
            • Adds an integer option
            • Add an option
            • Add an integer option
            • Add an option
            • Get option values
            • Get the value of an option
            • Decodes a string
            • Decode Base64 encoded string
            • Encodes a string
            • Encodes the given byte array into a char array
            • Adds a boolean option
            • Add a boolean option
            • Add double option
            • Add a double option
            • Decode lines
            • Add a long option
            • Add a string option
            Get all kandi verified functions for this library.

            igv Key Features

            No Key Features are available at this moment for igv.

            igv Examples and Code Snippets

            No Code Snippets are available at this moment for igv.

            Community Discussions


            Asked 2021-Nov-29 at 14:32

            I am writing a stored procedure in SQL Server that inserts and should show the id of the inserted record but when I use @@IDENTITY, SCOPE_IDENTITY() or IDENT_CURRENT it returns null.

            Table structure:



            Answered 2021-Nov-29 at 14:32

            Since you're using a SEQUENCE for the default of the IdFactura column, you're not going to be able to use @@IDENTITY, SCOPE_IDENTITY() or IDENT_CURRENT. Instead, you're going to need to use OUTPUT clause for the INSERT command.

            I changed your procedure to match what you're trying to achieve.:

            Source https://stackoverflow.com/questions/70142977


            Change javascript variable with html button
            Asked 2021-Nov-10 at 11:01

            I am implementing the IGV genome browser in a website. I would like to link a table with chromosome positions to the genome browser, so when a user clicks to one position, the genome browser changes to that position automatically.

            By now, I have the genome browser code in a separate javascript file, which uses the value of the button.



            Answered 2021-Nov-10 at 11:01

            You can access the ID and value in a click event:

            Source https://stackoverflow.com/questions/69910212


            Style containers that (don't) have a certain child class
            Asked 2021-Aug-11 at 13:54

            So I am building an angular application using primeng to build the ui. I am trying to restyle the p-menu component, mainly how the list items look like, problem is that I am trying to style the items that are not active, but the active class is only added to the link and not the list item. Which means that I am not able to style the list item since :has is not supported.

            I have tried to style it using 2 different methods, one is to style all listitems the normal way and the ones that has an anchor that is active to style it differently. The other method is the opposite by styling everything as active and to exclude those that don't have an active anchor.

            I tried to verify what was working and what not, just by adding margin:



            Answered 2021-Aug-11 at 13:54

            Although CSS won't go 'back up' to let you style an ancestor, you can put a pseudo element on an element (the anchor in this case) and position that absolute and let it take on the dimensions of the li if that is positioned.

            This snippet just moves all the relevant lis 60px with margin-left then moves the active one to 30px but also puts a pseudo before element on the link which extends back a bit and colors that.

            Obviously you will want to play with the positioning to get it right depending on what the other styles are doing.

            Source https://stackoverflow.com/questions/68740810


            AWS CDK giving: Could Not determine ordering between: after doing a build
            Asked 2021-Mar-14 at 05:41

            I'm trying to deploy cdk resources of a service

            This is my app.ts I have defined all the required resources and also defined the dependencies but when I build it I ger Coudl not determine ordering between: I'm not able to figure out what is going wrong?



            Answered 2021-Mar-14 at 05:41

            I was able to resolve the issue

            I named every stacks stackName a unique one

            for VPC : user-VPC-stack, etc and the build was successful

            Source https://stackoverflow.com/questions/66614700


            My onOpen trigger is running only half of the script
            Asked 2020-Nov-02 at 11:39

            My script onOpen is running only half of the script. When I try to run the scrip manually it works, but when I refresh the spreadsheet, it only changes the number to 5 in cell A10.



            Answered 2020-Nov-02 at 11:37

            The issue is that you are using a simple onOpen trigger which according to the official documentation has the following restriction which is relevant to your case:

            Simple triggers cannot access services that require authorization. For example, a simple trigger cannot send an email because the Gmail service requires authorization, but a simple trigger can translate a phrase with the Language service, which is anonymous.

            Essentially the simple trigger can not access DriveApp because it requires authorization to do so.


            Create an installable onOpen trigger instead. Rename your function and use any name except for onOpen and then go to your current project's triggers and create an installable trigger for your function (in my example myFunction):

            Source https://stackoverflow.com/questions/64644353


            Reading nasty XML with PHP
            Asked 2020-Sep-24 at 06:33

            I'm learning PHP and I was strugling with this XML file.
            I was wondering how can I read it and get some data from it.

            Can someone please explain to me a few things:

            • Because I have seen lots of related questions about registering xml namespaces(I dont know why that is so important)... How do you register every single namespace with getDocNamespaces()?
            • How can I access the folder data with this sentence:
              $xml = simplexml_load_file('zip://'.$filename.'.zip'.'#'.$filename.'.xml');
              adding /data/zip:// or zip://../data/ does not work also this is my proyect schema


            Answered 2020-Sep-24 at 06:33

            All you need to do is prepend path to filename like this:

            Source https://stackoverflow.com/questions/64038172


            I do not commit and the state is updated in Vuex
            Asked 2020-Aug-13 at 20:39

            I have a bit frustrating problem, result that I have a select / option where I choose an item and then a modal is opened and just by clicking on Add / update to table, it just commits to the state "itemstabla", but result that when I give it to edit item in the table and the model is opened and I change, for example, quantity to another digit, the state "itemstabla" is updated without executing the commit, it should only be done when clicking on the modal button.

            My store:



            Answered 2020-Aug-13 at 20:39

            With the use of editaritem like you do, I think you're actually passing the item itself, so it gets modified as it's a reference.

            Source https://stackoverflow.com/questions/63400864

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install igv

            You can download it from GitHub.
            You can use igv like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the igv component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • CLI

            gh repo clone igvteam/igv

          • sshUrl


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