pdftools | Text Extraction , Rendering and Converting of PDF Documents | Document Editor library
kandi X-RAY | pdftools Summary
kandi X-RAY | pdftools Summary
Scientific articles are typically locked away in PDF format, a format designed primarily for printing but not so great for searching or indexing. The new pdftools package allows for extracting text and metadata from pdf files in R. From the extracted plain-text one could find articles discussing a particular drug or species name, without having to rely on publishers providing metadata, or pay-walled search engines. The pdftools slightly overlaps with the Rpoppler package by Kurt Hornik. The main motivation behind developing pdftools was that Rpoppler depends on glib, which does not work well on Mac and Windows. The pdftools package uses the poppler c++ interface together with Rcpp, which results in a lighter and more portable implementation.
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Community Discussions
Trending Discussions on pdftools
QUESTION
My eventual goal is to transform thousands of pdfs into a corpus / document term matrix to conduct some topic modeling. I am using the pdftools package to import my pdfs and work with the tm package for preparing my data for text mining. I managed to import and transform one individual pdf, like this:
...ANSWER
Answered 2021-Jun-05 at 05:52You can write a function which has series of steps that you want to execute on each pdf.
QUESTION
I am trying to scrape this PDF containing information about company subsidiaries. I have seen many posts using the R package Tabulizer but this, unfortunately, doesn't work on my Mac for some reasons. As Tabulizer uses Java dependencies, I tried installing different versions of Java (6-13) and then reinstalling the packages, still no luck in getting this to work (what happens is when I run extract_tables
the R session aborts).
I need to scrape the whole pdf from page 19 onwards and construct a table showing company names and their subsidiaries. In the pdf, names start with any letters/number/symbol, whereas subsidiaries start with either a single or double dot.
So I tried with pdftools
and pdftables
packages. The code below provides a table similar to the one on page 19:
ANSWER
Answered 2021-May-26 at 06:59Like @Justin Coco hinted, this was a lot of fun. The code ended up a bit more complex than I anticipated, but I think the result should be what you imagined.
I used pdf_data
instead of pdf_text
so I can work with the position of words.
QUESTION
I was wondering how I could locate the 2nd & 3rd columns from left in the table on the last page (page 18) of the this pdf document.
I'm using pdftools
package, I'm wondering if there is a way to extract the 2nd & 3rd columns from left which are just numeric data?
ANSWER
Answered 2020-Dec-31 at 07:03Making use of some tidy verse packages this could be achieved like so:
- Filter for the values in the 2nd and 3rd column. The 2nd column values start at position
x=189
, the 3rd col atx=252
. - Additionally to make sure that we only get the values I first convert to numeric whereby all text gets converted to NA. Note: One of the values has a comma as decimal mark, which I first had to remove.
- After getting the values I reshape the dataset using
pivot_wider
for which I add a rowid
. - Finally I rename the cols.
QUESTION
Is it possible to read/convert PDF portfolios in R?
I usually use pdftools
, however, I get an error:
ANSWER
Answered 2021-May-06 at 03:27There seems to be an issue with pdf_convert
handling one-page raw pdf data (it wants to use basename(pdf)
under these conditions), so I have edited that function so that it also works with the second attached pdf file.
If you only need the first file then you could run this with the original pdf_convert
function, but it will give an error with the second file.
If you are interested in rendering raster graphics from the attached files this worked for me:
QUESTION
I'm working with C# and adobe acrobat SDK. When the program throws an error due to the pdf already being compressed I want to move the pdf.
However, C# complains that the file is being used by another process and I know it has to do with the SDK and not another program.
After some debugging I found out that compressPDFOperation.Execute
is the culprit.
How can I close it so that I can move the file?
...ANSWER
Answered 2021-Apr-29 at 11:28I've found a solution , it's not best practice but I don't know an other way to do it.
I've declared all the variables used to execute the compression (sourceFileRef, compressPdfOperation, ...) before the try catch statement and after result.SaveAs(...)
I set those variables to null and run the garbage collection.
QUESTION
I am using the R programming language. I learned how to take pdf files from the internet and load them into R. For example, below I load 3 different books by Shakespeare into R:
...ANSWER
Answered 2021-Apr-09 at 06:39As the error message suggests, VectorSource
only takes 1 argument. You can rbind
the datasets together and pass it to VectorSource
function.
QUESTION
I'm using R to pull data from PDFs and so far it has been going well. I just opened up a new batch of PDFs and saw that I have to figure out how to account for empty cells. I haven't found a way to do this, and I have hundreds of pages that I need to go through.
I've included some sample data. I haven't found a way to attach the PDFs here, and these are not posted on the web anywhere. I saved df
as a CSV, then copied and pasted that into a word document which I saved as a CSV for this example. Screenshot attached as well.
ANSWER
Answered 2021-Apr-01 at 02:09This looks like a good scenario to use the tabulizer
package. It works really well when there are nicely formatted tables like this in the PDF. See the vignette. The best function here for you would be tabulizer::extract_tables
. It should also recognize the blank spaces as empty values assuming the PDFs are all well formatted like this.
QUESTION
I've been web scraping articles in R from the Oxford journals and want to grab the full text of specific articles. All articles have a pdf link to them so I've been trying to pull the pdf link and scrape the entire text onto a csv. The full text should all fit into 1 row however the output in the csv file shows one article of 11 rows. How can I fix this issue?
The code is below:
...ANSWER
Answered 2021-Mar-31 at 03:30Looking at your last function, if I understand correctly, you want to take the url and scrape all the text into the a data frame/tibble and then export it to a csv. Here is how you can do it with just 1 article, and you should be able to loop through some links with a little manipulation (apologies if I am misunderstanding):
QUESTION
I have a pdf with 10 pages i want to read all data. i worked on below code but it gives me only first page of data
...ANSWER
Answered 2021-Feb-22 at 09:10I just tested your code and it worked fine for me. I give you a simpler way that you may like more.
QUESTION
The below code helps me pull first page of every PDF file from the directory.
...ANSWER
Answered 2021-Feb-03 at 01:39If you want to search for the lines in the first page you can try with lapply
as :
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Install pdftools
The ?pdftools manual page shows a brief overview of the main utilities. The most important function is pdf_text which returns a character vector of length equal to the number of pages in the pdf. Each string in the vector contains a plain text version of the text on that page.
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