MIPGEN | One stop MIP design and analysis | Machine Learning library

MIPGEN is a C++ library typically used in Artificial Intelligence, Machine Learning applications. MIPGEN has no bugs, it has no vulnerabilities and it has low support. However MIPGEN has a Non-SPDX License. You can download it from GitHub.

One stop MIP design and analysis. Use MIPgen to design custom mip panels for target enrichment of moderate to high complexity DNA targets ranging from 120 to 250bp in size. To compile MIPgen, you will need a C++ compiler, such as GCC (That’s it! For running design and analysis, see below for dependencies. To build MIPgen from source, simply enter the MIPGEN directory and type make. The mipgen executable can be used to perform designs. MIPgen accepts many options intended to maximize the flexibility of your designs. The only required parameters are the minimum and maximum sizes for the captured sequence, a prefix for output files and a BED file consisting of the coordinates of the desired targets, and the bwa- and samtools-indexed reference genome from which to pull the sequences. Other options provide control over tiling, scoring and oligo design behavior. MIPgen offers three scoring methods based on two methods of scoring: SVR and logistic regression. Both methods offer similar performance, with slight improvements seen with the SVR scoring. The mixed scoring option will perform designs primarily with the faster logistic regression score and finish with the more accurate SVR scoring scheme.