kentUtils | UCSC command line bioinformatic utilities

by ENCODE-DCC C Version: v302.1.0 License: No License

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | kentUtils Summary

kentUtils is a C library. kentUtils has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

UCSC command line bioinformatic utilities

Support

Quality

Security

License

Reuse

Support

kentUtils has a low active ecosystem.

It has 126 star(s) with 92 fork(s). There are 45 watchers for this library.

It had no major release in the last 12 months.

kentUtils has no issues reported. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of kentUtils is v302.1.0

Quality

kentUtils has no bugs reported.

Security

kentUtils has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

kentUtils does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

kentUtils releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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kentUtils Key Features

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kentUtils Examples and Code Snippets

No Code Snippets are available at this moment for kentUtils.

Community Discussions

Trending Discussions on kentUtils

Creating files within R code

QUESTION

Creating files within R code

Asked 2018-Jun-29 at 13:05

I am writing an R code which uses command line tools.

These tools create temporary files which are required for the code to progress, this code will be given to other users to use.

My question is what is the most appropriate way to deal with these files through R specially that other users will be using this code and I don't want to be overwriting user existing files.

Should I create a specific directory to save these files in? And is it a good idea to implement command line tools in an R code?

I am using kentUtils bedToPsl so a psl file is being created, and then I am using pslMap so the output of pslMap mapInfo is also stored in another file.

I am only interested in the results of mapInfo and not of in the other files created.

...

ANSWER

Answered 2018-Jun-29 at 13:05

If it were me, I would create two directories workspace/temp and workspace/output with these commands:

Source https://stackoverflow.com/questions/51099496

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install kentUtils

You can download it from GitHub.

Support

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