encoded | Metadata database for ENCODE project

 by   ENCODE-DCC JavaScript Version: v130.0 License: MIT

kandi X-RAY | encoded Summary

kandi X-RAY | encoded Summary

encoded is a JavaScript library typically used in Utilities applications. encoded has no vulnerabilities, it has a Permissive License and it has low support. However encoded has 14 bugs. You can download it from GitHub.

Metadata database for ENCODE project
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              encoded has a low active ecosystem.
              It has 105 star(s) with 52 fork(s). There are 32 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 29 have been closed. On average issues are closed in 62 days. There are 68 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of encoded is v130.0

            kandi-Quality Quality

              OutlinedDot
              encoded has 14 bugs (4 blocker, 0 critical, 7 major, 3 minor) and 2675 code smells.

            kandi-Security Security

              encoded has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              encoded code analysis shows 0 unresolved vulnerabilities.
              There are 58 security hotspots that need review.

            kandi-License License

              encoded is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              encoded releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.
              encoded saves you 61710 person hours of effort in developing the same functionality from scratch.
              It has 83358 lines of code, 3917 functions and 853 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed encoded and discovered the below as its top functions. This is intended to give you an instant insight into encoded implemented functionality, and help decide if they suit your requirements.
            • Assemble the generated graph from the given files .
            • Update the tree
            • Create an Analysis Step
            • Create a bar chart
            • Create a diamond chart .
            • Generate status data for an experiment .
            • Create facet object from specified files
            • Inspects the metadata of a file
            • Collect all derived members from given file .
            • Creates a Q - quality object .
            Get all kandi verified functions for this library.

            encoded Key Features

            No Key Features are available at this moment for encoded.

            encoded Examples and Code Snippets

            copy iconCopy
            const atob = str => Buffer.from(str, 'base64').toString('binary');
            
            
            atob('Zm9vYmFy'); // 'foobar'
            
              
            Decode a base64 encoded string .
            pythondot img2Lines of Code : 72dot img2License : Permissive (MIT License)
            copy iconCopy
            def base64_decode(encoded_data: str) -> bytes:
                """Decodes data according to RFC4648.
            
                This does the reverse operation of base64_encode.
                We first transform the encoded data back to a binary stream, take off the
                previously appended b  
            Decrypt encoded message .
            pythondot img3Lines of Code : 21dot img3License : Permissive (MIT License)
            copy iconCopy
            def decrypt(self, encoded_message: str) -> str:
                    """
                    Performs shifting of the encoded_message w.r.t. the shuffled __key_list
                    to create the decoded_message
            
                    >>> ssc = ShuffledShiftCipher('4PYIXyqeQZr44')
                  
            Decode encoded value .
            pythondot img4Lines of Code : 16dot img4License : Non-SPDX (Apache License 2.0)
            copy iconCopy
            def decode(self, spec, encoded_value):
                """Decodes `value` from a batchable tensor encoding.
            
                Args:
                  spec: The TypeSpec for the result value.  If encoded values with spec `s`
                    were batched, then `spec` should be `s.batch(batch_size  

            Community Discussions

            QUESTION

            Indexed Initial algebras for GADTs
            Asked 2022-Mar-31 at 09:23

            In his paper Generics for the Masses Hinze reviews encoding of data type.

            Starting from Nat

            ...

            ANSWER

            Answered 2022-Mar-14 at 18:05

            The difference is the category. Nat is an initial algebra in the category of types. Rep is an initial algebra in the category of indexed types. The category of indexed types has as objects type constructors of kind * -> *, and as morphisms from f ~> g, functions of type forall t. f t -> g t.

            Then Rep is the initial algebra for the functor RepF defined as follows:

            Source https://stackoverflow.com/questions/71469359

            QUESTION

            Java PriorityQueue: how to heapify a Collection with a custom Comparator?
            Asked 2022-Mar-10 at 03:24

            For example, given a List of Integer List list = Arrays.asList(5,4,5,2,2), how can I get a maxHeap from this List in O(n) time complexity?

            The naive method:

            ...

            ANSWER

            Answered 2021-Aug-28 at 15:09
            If you don't mind some hack

            According to the java doc of PriorityQueue(PriorityQueue)

            Creates a PriorityQueue containing the elements in the specified priority queue. This priority queue will be ordered according to the same ordering as the given priority queue.

            So we can extend PriorityQueue as CustomComparatorPriorityQueue to hold the desired comparator and the Collection we need to heapify. Then call new PriorityQueue(PriorityQueue) with an instance of CustomComparatorPriorityQueue.

            Below is tested to work in Java 15.

            Source https://stackoverflow.com/questions/68960310

            QUESTION

            How to speed up async requests in Python
            Asked 2022-Mar-02 at 09:16

            I want to download/scrape 50 million log records from a site. Instead of downloading 50 million in one go, I was trying to download it in parts like 10 million at a time using the following code but it's only handling 20,000 at a time (more than that throws an error) so it becomes time-consuming to download that much data. Currently, it takes 3-4 mins to download 20,000 records with the speed of 100%|██████████| 20000/20000 [03:48<00:00, 87.41it/s] so how to speed it up?

            ...

            ANSWER

            Answered 2022-Feb-27 at 14:37

            If it's not the bandwidth that limits you (but I cannot check this), there is a solution less complicated than the celery and rabbitmq but it is not as scalable as the celery and rabbitmq, it will be limited by your number of CPU.

            Instead of splitting calls on celery workers, you split them on multiple processes.

            I modified the fetch function like this:

            Source https://stackoverflow.com/questions/71232879

            QUESTION

            Motorola 68000 assembler syntax for Program Counter Indirect with Index
            Asked 2022-Mar-02 at 01:39

            I've been putting together my own disassembler for Sega Mega Drive ROMs, basing my initial work on the MOTOROLA M68000 FAMILY Programmer’s Reference Manual. Having disassembled a considerable chunk of the ROM, I've attempted to reassemble this disassembled output, using VASM as it can accept the Motorola assembly syntax, using its mot syntax module.

            Now, for the vast majority of the reassembly, this has worked well, however there is one wrinkle with operations that have effective addresses defined by the "Program Counter Indirect with Index (8-Bit Displacement) Mode". Given that I'm only now learning Motorola 68000 assembly, I wanted to confirm my understanding and to ask: what is the proper syntax for these operations?

            Interpretation

            For example, if I have two words:

            ...

            ANSWER

            Answered 2022-Feb-27 at 12:17

            QUESTION

            Javascript: frame precise video stop
            Asked 2022-Jan-28 at 14:55

            I would like to be able to robustly stop a video when the video arrives on some specified frames in order to do oral presentations based on videos made with Blender, Manim...

            I'm aware of this question, but the problem is that the video does not stops exactly at the good frame. Sometimes it continues forward for one frame and when I force it to come back to the initial frame we see the video going backward, which is weird. Even worse, if the next frame is completely different (different background...) this will be very visible.

            To illustrate my issues, I created a demo project here (just click "next" and see that when the video stops, sometimes it goes backward). The full code is here.

            The important part of the code I'm using is:

            ...

            ANSWER

            Answered 2022-Jan-21 at 19:18

            The video has frame rate of 25fps, and not 24fps:

            After putting the correct value it works ok: demo
            The VideoFrame api heavily relies on FPS provided by you. You can find FPS of your videos offline and send as metadata along with stop frames from server.

            The site videoplayer.handmadeproductions.de uses window.requestAnimationFrame() to get the callback.

            There is a new better alternative to requestAnimationFrame. The requestVideoFrameCallback(), allows us to do per-video-frame operations on video.
            The same functionality, you domed in OP, can be achieved like this:

            Source https://stackoverflow.com/questions/70613008

            QUESTION

            Preferring shift over reduce in parser for language without statement terminators
            Asked 2022-Jan-04 at 06:17

            I'm parsing a language that doesn't have statement terminators like ;. Expressions are defined as the longest sequence of tokens, so 5-5 has to be parsed as a subtraction, not as two statements (literal 5 followed by a unary negated -5).

            I'm using LALRPOP as the parser generator (despite the name, it is LR(1) instead of LALR, afaik). LALRPOP doesn't have precedence attributes and doesn't prefer shift over reduce by default like yacc would do. I think I understand how regular operator precedence is encoded in an LR grammar by building a "chain" of rules, but I don't know how to apply that to this issue.

            The expected parses would be (individual statements in brackets):

            ...

            ANSWER

            Answered 2022-Jan-04 at 06:17

            The issue you're going to have to confront is how to deal with function calls. I can't really give you any concrete advice based on your question, because the grammar you provide lacks any indication of the intended syntax of functions calls, but the hint that print(5) is a valid statement makes it clear that there are two distinct situations, which need to be handled separately.

            Consider:

            Source https://stackoverflow.com/questions/70571344

            QUESTION

            Erdpy: Token issuance transaction fails with code: internal_issue
            Asked 2021-Dec-26 at 16:11

            I try to make an ESDT token issuance transaction using the following Python code

            ...

            ANSWER

            Answered 2021-Dec-26 at 16:11

            You use str(0.05 * 10**18) to get the string for the value.

            However, this actually outputs the value in scientific notation, which isn't what the blockchain expects.

            Source https://stackoverflow.com/questions/69595384

            QUESTION

            How to detect if a device can play Dolby Atmos Sound with Javascript
            Asked 2021-Dec-24 at 06:57

            I am looking for a way to detect if the device I am using can support Dolby Atmos sounds.

            After searching around I found this call.

            https://github.com/w3c/media-capabilities/blob/main/explainer.md#spatial-audio

            ...

            ANSWER

            Answered 2021-Dec-24 at 06:57

            Detecting the codec doesn't necessarily detect whether the system can support Dolby Atmos

            Correct.

            What reliable way is there to detect if your system will truly support Dolby Atmos whether its with a receiver or a Dolby Atmos compliant sound bar.

            Unfortunately, this undetectable from the browser.

            The browser itself and even the OS doesn't always know what is downstream. Sorry for the bad news!

            Source https://stackoverflow.com/questions/70263091

            QUESTION

            Inverting an Order-Preserving Minimal Perfect Hash Function in Better than O(K*lg N) Running Time
            Asked 2021-Nov-20 at 16:05

            I am trying to find a more efficient solution to a combinatorics problem than the solution I have already found.

            Suppose I have a set of N objects (indexed 0..N-1) and wish to consider each subset of size K (0<=K<=N). There are S=C(N,K) (i.e., "N choose K") such subsets. I wish to map (or "encode") each such subset to a unique integer in the range 0..S-1.

            Using N=7 (i.e., indexes are 0..6) and K=4 (S=35) as an example, the following mapping is the goal:
            0 1 2 3 --> 0
            0 1 2 4 --> 1
            ...
            2 4 5 6 --> 33
            3 4 5 6 --> 34

            N and K were chosen small for the purposes of illustration. However, in my actual application, C(N,K) is far too large to obtain these mappings from a lookup table. They must be computed on-the-fly.

            In the code that follows, combinations_table is a pre-computed two-dimensional array for fast lookup of C(N,K) values.

            All code given is compliant with the C++14 standard.

            If the objects in a subset are ordered by increasing order of their indexes, the following code will compute that subset's encoding:

            ...

            ANSWER

            Answered 2021-Oct-21 at 02:18

            Take a look at the recursive formula for combinations:

            Suppose you have a combination space C(n,k). You can divide that space into two subspaces:

            • C(n-1,k-1) all combinations, where the first element of the original set (of length n) is present
            • C(n-1, k) where first element is not preset

            If you have an index X that corresponds to a combination from C(n,k), you can identify whether the first element of your original set belongs to the subset (which corresponds to X), if you check whether X belongs to either subspace:

            • X < C(n-1, k-1) : belongs
            • X >= C(n-1, k-1): doesn't belong

            Then you can recursively apply the same approach for C(n-1, ...) and so on, until you've found the answer for all n elements of the original set.

            Python code to illustrate this approach:

            Source https://stackoverflow.com/questions/69646216

            QUESTION

            In assembly, how to add integers without destroying either operand?
            Asked 2021-Nov-17 at 22:06

            Using AT&T syntax on x86-64, I wish to assemble c = a + b; as

            ...

            ANSWER

            Answered 2021-Nov-17 at 05:12

            Only a few specific GPR instructions have VEX encodings, primarily the BMI1/BMI2 instructions that were added after AVX already existed. See the list in Table 2-28, which has ANDN, BEXTR, BLSI, BLSMSK, BLSR, BZHI, MULX, PDEP, PEXT, RORX, SARX, SHLX, SHRX, as well as the same list in 5.1.16.1. For example, andn's manual entry lists only a VEX encoding, and's manual entry doesn't list any.

            So Intel (unfortunately) didn't introduce a brand new three-operand alternate encoding for the entire instruction set. They just introduced a few specific instructions that take three operands and use VEX for it. In some cases these have similar or equivalent functionality to an existing instruction, e.g. SHLX for SHL with a variable count, and so effectively provide a three-operand version of the previous two-operand instruction, but only in those special cases. There are not equivalent instructions across the board.

            The "old style" two-operand form remains the only version of the add instruction. However, as fuz points out in comments, lea can be a good way to add two registers and write the result to a third, subject to some restrictions on operand size.

            See Using LEA on values that aren't addresses / pointers? for more general things LEA can do, like copy-and-add a constant to a register, or shift-and-add. Compilers already know this and will use lea where appropriate, any time it saves instructions. (Or with some tune options like -mtune=atom for old in-order Atom, will use lea even when they could have used add.)

            If more flexible encodings of common integer instructions other than add existed, like and/xor/sub, gcc -O3 -march=skylake would already be using them in its own asm output, without needing inline asm. Or if alternative instructions could get the job done, like lea for add, would be doing that, so it makes sense to look at compiler output to see what tricks it knows. Trying it yourself would make more sense as something to play around with in a stand-alone .s file that just makes an exit system call, or just to single-step, removing the complexity of using inline asm. (GAS by default doesn't restrict instruction-sets. gcc -march=skylake doesn't pass that on to the assembler, as.)

            In your inline asm, your c operand should be to output-only: =r instead of +r. The old value is overwritten, so there's no need to tell the compiler to produce it as an input. (Like you said, you want c = a+b not c += a+b.)

            Using a single lea as the asm template means you don't need a =&r early-clobber output, because your asm will read all its inputs before writing that output. In your case, having it as an input/output was probably stopping the compiler from choosing the same register as one of the inputs, which could have broken with mov; add.

            Source https://stackoverflow.com/questions/69995238

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install encoded

            See [Snovault OSX System Installation][]. ENCODE installs Snovault as it is a dependency. The System Installation is the same for both. However, you do not need to set up a running Snovault instance yourself.
            For issues see [Snovault OSX App Installation][] first.
            Create a virtual env in your work directory. This example uses the python module venv. Other options would also work, like conda or pyenv. Please note that older versions of `pip` may cause issues when updating the application. On MacOS `pip` `21.0.1` is known to work. ```bash $ cd your-work-dir $ python3 -m venv encoded-venv $ source encoded-venv/bin/activate $ pip install -U pip==21.0.1 ```
            Clone the repo and cd into it ```bash git clone git@github.com:ENCODE-DCC/encoded.git cd encoded ```
            Build Application ```bash make clean && make install ``` If you need to develop `snovault` side by side you can use the following commands instead, assuming `encoded` and `snovault` are present at the same level in your filesystem and virtual environment is activated. ```bash $ cd .. && pip install -e snovault $ cd encoded && make clean && make install ```
            Run Application ```bash $ dev-servers development.ini --app-name app --clear --init --load # In a separate terminal, make sure you are in the encoded-venv $ pserve development.ini ```
            Browse to the interface at http://localhost:6543
            Run Tests ```bash # Make sure you are in the encoded-venv ./circle-tests.sh bdd ./circle-tests.sh indexing ./circle-tests.sh indexer ./circle-tests.sh not-bdd-non-indexing ./circle-tests.sh npm ``` You can also invoke `pytest` directly if you need more granular control over which Python tests to run. ```bash # Make sure you are in your venv # Run a specific test in a specific file $ pytest TEST_FILE_PATH::TEST_NAME # Run tests with the given mark $ pytest -m $PYTEST_MARK ```
            [Snovault OSX System Installation]: https://github.com/ENCODE-DCC/snovault/blob/dev/README.rst#system-installation-osx-catlina-10152 [Snovault OSX App Installation]: https://github.com/ENCODE-DCC/snovault/blob/dev/README.rst#application-installation.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • CLI

            gh repo clone ENCODE-DCC/encoded

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            git@github.com:ENCODE-DCC/encoded.git

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