shrimp | software package for aligning genomic reads | Script Programming library
kandi X-RAY | shrimp Summary
kandi X-RAY | shrimp Summary
Assume we downloaded the linux binary package in ./SHRiMP_2_1_1.lx26.x86_64.tar.gz. $ tar xvzf SHRiMP_2_1_1.lx26.x86_64.tar.gz $ cd SHRiMP_2_1_1 $ file bin/gmapper bin/gmapper: ELF 64-bit LSB executable, AMD x86-64, version 1 (SYSV), for GNU/Linux 2.6.9, statically linked, for GNU/Linux 2.6.9, not stripped $ export SHRIMP_FOLDER=$PWD. Done! At this point the binaries are in bin/, and the various scripts are in utils/.
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QUESTION
I'd like to find the top 3 most ordered products per supplier in mySql. Here's my simplified model and its tables (primary keys are in italics):
Product : product_id, name, supplier_id
Supplier : supplier_id, name
Order_item : order_item_id, product_id
So 1 supplier can have N products, 1 order_item has 1 product.
So far this is what i was able to get :
...ANSWER
Answered 2022-Apr-08 at 11:06In MySQL 8 you should be able to:
QUESTION
I don't understand how to use nested loops(for, foreach,while,dowhile) for printing this multi-dimensional array values in separate lines. I am new in this sector.
Here is the code:
...ANSWER
Answered 2022-Feb-21 at 15:15you have associative array inside associative array You have to loop the first associative array and inside it loop the associative array like this
QUESTION
I have a web application that connects to MongoDB. Everything works fine before I create the admin user in mongodb:
...ANSWER
Answered 2022-Feb-15 at 09:40What library or driver are you using? Regardless, you could try adding ?authenticationDatabase=admin to end of the url.
QUESTION
I have a set of strings that need to be decoded. The strings format varies with products on the site. So its pretty unpredictable. Few examples of the format are given below:
...ANSWER
Answered 2022-Jan-30 at 15:03This is fixed in python3 now. Used below code to convert :
temp['Key_Features']=longDescription.encode().decode('unicode-escape').encode('latin1').decode('utf8').replace('&','&').replace(' ','').replace('"','"')
This happened because data was in different encoding formats and couldn't be handled by a single encoding/decoding. The above logic works for all.
QUESTION
I am a React noob. I am using Material UI and Material UI icons and React to create a title with a forward and back button, so the user can scroll through the pictures on display. When I press the forward button, the picture in "index 2" shows nothing. When I press the back button, the picture in "index 0" is blank (weird, right?). This seems like a super weird bug in my mind. Is there something I am missing here? It is making no sense to me.
Here is my code (as you can see I'm still editing things, so I still have the default text from when I grabbed this from Material UI).
...ANSWER
Answered 2022-Jan-24 at 02:29In your handler functions, the array index may go out of bound. So you should modify your handler functions like below:
QUESTION
This is the current XML:
...ANSWER
Answered 2022-Jan-10 at 09:57I would let the minprice
element trigger the insertion e.g.
QUESTION
I am using ReactJs and React-dom in 17.02 version.
I had the same problem described in this question: a value to increment and decrement using button. I used the solution proposed, changed my previous code.
From this one:
...ANSWER
Answered 2021-Dec-29 at 20:33You didn't show where the reference to card
comes from in handleDecrement
, but somewhere the reference is changed so it won't work in indexOf. Instead, create a new list and avoid using mutation.
QUESTION
I want to make a converter between crypto coins. I found unit converter sample from Codepen. converter works fine. My coingecko api work fine. But ı can't combine them. I can convert coin price but ı want to use APİ for current coin price. I searched on internet to use APİ in js 'var' but ı don't know maybe it's not possible to use api in input.
This is converters: https://codepen.io/devere-here/pen/OzbpKY
(I changed value to coins prices.(meters: usd, kilometers: ethereum, centimeters: bitcoin)
This is converter JS
...ANSWER
Answered 2021-Nov-18 at 13:54You need to rewrite de conversion code, for the help i make an basic code.
QUESTION
I need to apply function .diff() to a column. if the row value in another column is equal to the previous row of the same column.
Example:
...ANSWER
Answered 2021-Nov-09 at 01:25Is this what you want?
QUESTION
For my research project I'm trying to distinguish between hydra plant (the larger amoeba looking oranges things) and their brine shrimp feed (the smaller orange specks) so that we can automate the cleaning of petri dishes using a pipetting machine. An example of a snap image from the machine of the petri dish looks like so:
I have so far applied a circle mask and an orange color space mask to create a cleaned up image so that it's mostly just the shrimp and hydra.
There is some residual light artifacts left in the filtered image, but I have to bite the cost or else I lose the resolution of the very thin hydra such as in the top left of the original image.
I was hoping to box and label the larger hydra plants but couldn't find much applicable literature for differentiating between large and small objects of similar attributes in an image, to achieve my goal.
I don't want to approach this using ML because I don't have the manpower or a large enough dataset to make a good training set, so I would truly appreciate some easier vision processing tools. I can afford to lose out on the skinny hydra, just if I can know of a simpler way to identify the more turgid, healthy hydra from the already cleaned up image that would be great.
I have seen some content about using openCV findCountours
? Am I on the right track?
Attached is the code I have so you know what datatypes I'm working with.
...ANSWER
Answered 2021-Oct-12 at 10:58You are on the right track, but I have to be honest. Without DeepLearning you will get good results but not perfect.
That's what I managed to get using contours:
Code:
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