savant | generation genome browser designed for the latest generation | Data Labeling library

 by   compbio-UofT Java Version: Current License: No License

kandi X-RAY | savant Summary

kandi X-RAY | savant Summary

savant is a Java library typically used in Artificial Intelligence, Data Labeling applications. savant has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

Savant is a next-generation genome browser designed for the latest generation of genome data
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            kandi-support Support

              savant has a low active ecosystem.
              It has 12 star(s) with 4 fork(s). There are 9 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 8 open issues and 7 have been closed. On average issues are closed in 12 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of savant is current.

            kandi-Quality Quality

              savant has 0 bugs and 0 code smells.

            kandi-Security Security

              savant has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              savant code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              savant does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              savant releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              savant saves you 92812 person hours of effort in developing the same functionality from scratch.
              It has 101028 lines of code, 4778 functions and 701 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed savant and discovered the below as its top functions. This is intended to give you an instant insight into savant implemented functionality, and help decide if they suit your requirements.
            • Initialize the components
            • Saves to a file
            • Sets the tracks associated with this frame
            • Load the configuration file
            • Initialize the form components
            • Invoked when the user selects an OK button
            • Validates user defined length
            • Change the genome from a file
            • Adds an argument to the panel
            • Paint the label
            • Render the axis
            • Read the tabix index from a file
            • Parses the next line to see if it is a track line
            • Creates the Tools menu
            • Creates the appearance menu
            • Create from an XML file
            • Retrieves the value at the specified cell
            • Reads the header information from the BBFile
            • Initialize this menu
            • Override paintComponent
            • Get the inner panel for news
            • Paint the component
            • Runs the tool
            • Paint the background
            • Initialize this panel
            • Generate the alignment blocks
            Get all kandi verified functions for this library.

            savant Key Features

            No Key Features are available at this moment for savant.

            savant Examples and Code Snippets

            No Code Snippets are available at this moment for savant.

            Community Discussions

            QUESTION

            I can't install R package 'Peptides' from CRAN in R version 4.1.1
            Asked 2021-Sep-26 at 10:03

            I tried to install the package 'Peptides' from the CRAN using install.packages("peptides", dependency=TRUE), but my R version gave me the following messages:

            ...

            ANSWER

            Answered 2021-Sep-26 at 09:04

            Try install.packages("Peptides", dependency=TRUE). I think it is because it is capitalized :)

            Source https://stackoverflow.com/questions/69333252

            QUESTION

            Why does python parsing table BeatifulSoup do not work on this website as intended?
            Asked 2021-Mar-29 at 19:18

            I am stuck on this website. I've done some small codes to learn about BeatifulSoup for the past week, I did some research on how to use it and the respective official documentation. Not only that, but review some tutorials and videos on how to parse a table from websites. I've parsed data from tables using the methods soup.find() and soup.select() from several websites such as:

            1. Games engine website
            2. MLB stats website
            3. Wikipedia

            for example, for the MLB stats website I used the following code:

            ...

            ANSWER

            Answered 2021-Mar-29 at 19:18

            Problem: The page uses javascript to fetch and display the content, so you cannot just use requests or other similars because javascript code would not be executed.
            Solution: use selenium in order to load the page then parse the content with BeautifulSoup.
            Sample code here:

            Source https://stackoverflow.com/questions/66860107

            QUESTION

            Convert a plane from Point/Normal/D to plane equation
            Asked 2021-Feb-16 at 16:31

            I have a plane class that stores a plane as

            ...

            ANSWER

            Answered 2021-Feb-16 at 16:31

            Using homogeneous coordinates points are

            Source https://stackoverflow.com/questions/66227192

            QUESTION

            Error: useRoutes() may be used only in the context of a component
            Asked 2020-Oct-18 at 05:32

            I'm adding React modules dynamically using System JS, and it works great!
            Except if I try to use the react-router context from the loaded module.

            "react-router-dom": "6.0.0-beta.0"

            You can see in the react component explorer that there is definitely a component as an ancestor.
            The routing works fine in the host application - it only breaks when called from a dynamically loaded component.

            I'm a novice with React, so I could be making a wrong assumption of how the contexts are provided to deeply nested or dynamically loaded children.

            Router is mounted here -
            https://github.com/savantly-net/sprout-platform/blob/47cb99f7076bf6df09d9fec8e2d6c7ee78ce08af/frontend/apps/webapp/src/index.tsx#L204

            Module is being loaded here -
            https://github.com/savantly-net/sprout-platform/blob/47cb99f7076bf6df09d9fec8e2d6c7ee78ce08af/frontend/apps/webapp/src/features/plugins/AppRootPage.tsx#L84

            The module element that throws the exception is here -
            https://github.com/savantly-net/sprout-platform/blob/47cb99f7076bf6df09d9fec8e2d6c7ee78ce08af/backend/modules/forms/src/plugin/FormsRootPage.tsx#L47

            ...

            ANSWER

            Answered 2020-Oct-18 at 05:32

            The problem was due to having the react-router-dom lib in the module bundle.
            When the dynamic module loaded, it was using it's own version of the lib, rather then the one provided by the host application.

            I added this to the externals in my webpack/rollup config, and the problem was solved.

            I can now have children routes managed by a plugin inside a host application! =].

            Webpack -
            https://github.com/savantly-net/sprout-platform/blob/e746085ebd65820fd449c968385913f2cc86ee0d/frontend/tools/sprout-toolkit/src/config/webpack.plugin.config.ts#L176

            Source https://stackoverflow.com/questions/64403652

            QUESTION

            Why is my Kivy windows Executable not running?
            Asked 2020-Sep-23 at 12:20

            I have made a kivy app and packaged it as an executable file but for some reason the executable is only opening for a split second then closing without showing anything. I am sure none of my code is flawed as it works when ran in my text editor, what can I do to fix this issue?

            Spec file-

            ...

            ANSWER

            Answered 2020-Sep-23 at 12:20

            I found the issue, it was because I was running the build folder executable not the dist folder executable, aparently it is a common error people make.

            Source https://stackoverflow.com/questions/64020355

            QUESTION

            How to browse a csv in Python by intervals of letters at the beginning of lines
            Asked 2020-Jun-02 at 01:51

            I have a csv that contains a lot of data. When I launch a webscrapping, I receive a:

            ...

            ANSWER

            Answered 2020-Jun-02 at 01:51

            Assuming the file is sorted, the following will:

            • group rows into their starting letter.
            • collect rows from five groups at a time.
            • call process() with the rows.
            • sample process() will:
              • convert the pmids string to a list of strings
              • count the number of rows
              • print the first and last row of the group.

            code:

            Source https://stackoverflow.com/questions/62142163

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install savant

            You can download it from GitHub.
            You can use savant like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the savant component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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            CLONE
          • HTTPS

            https://github.com/compbio-UofT/savant.git

          • CLI

            gh repo clone compbio-UofT/savant

          • sshUrl

            git@github.com:compbio-UofT/savant.git

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