quip | Compressing next-generation sequencing data | Compression library

 by   dcjones C Version: Current License: BSD-3-Clause

kandi X-RAY | quip Summary

kandi X-RAY | quip Summary

quip is a C library typically used in Utilities, Compression applications. quip has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the [FASTQ] and [SAM/BAM] formats, compressing large datasets to as little as 15% of their original size.
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            kandi-support Support

              quip has a low active ecosystem.
              It has 63 star(s) with 7 fork(s). There are 4 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 11 open issues and 19 have been closed. On average issues are closed in 10 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of quip is current.

            kandi-Quality Quality

              quip has 0 bugs and 0 code smells.

            kandi-Security Security

              quip has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              quip code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              quip is licensed under the BSD-3-Clause License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              quip releases are not available. You will need to build from source code and install.
              Installation instructions, examples and code snippets are available.
              It has 93 lines of code, 1 functions and 2 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of quip
            Get all kandi verified functions for this library.

            quip Key Features

            No Key Features are available at this moment for quip.

            quip Examples and Code Snippets

            Returns a calendar without the time .
            javadot img1Lines of Code : 10dot img1License : Permissive (MIT License)
            copy iconCopy
            private static Calendar getCalendarWithoutTime(Date date) {
                    Calendar calendar = new GregorianCalendar();
                    calendar.setTime(date);
                    calendar.set(Calendar.HOUR, 0);
                    calendar.set(Calendar.HOUR_OF_DAY, 0);
                    calendar.s  
            Marshals a Calendar value .
            javadot img2Lines of Code : 6dot img2License : Permissive (MIT License)
            copy iconCopy
            public String marshal(Calendar value) {
                    if (value == null) {
                        return null;
                    }
                    return (javax.xml.bind.DatatypeConverter.printDateTime(value));
                }  
            Converts the given Calendar to Date .
            javadot img3Lines of Code : 4dot img3License : Permissive (MIT License)
            copy iconCopy
            public Date toDate(XMLGregorianCalendar calendar) {
                    return calendar.toGregorianCalendar()
                        .getTime();
                }  

            Community Discussions

            QUESTION

            SwiftUI Child Views not updating as expected with environmentObject
            Asked 2022-Mar-20 at 23:57

            Please see my example provided, I have recreated my pattern as accurately as possible while leaving out details that are not relevant to the question.

            I have @Published property variables in my viewmodel which are updated/assigned after a fetch to firebase. Each time one of the root or child views is accessed, the fetch logic runs (or takes from cache), and then maps my values to the @Published dictionaries I have in my view model. What concerns me, is that my CardView always updates successfully, while my AlternateCardView only gets the correct values from my dictionary on first load, but never again unless I kill the app.

            Am I missing an obvious best-practice here? Is there a better way to implement my pattern to avoid this bug? I'd like my AlternateCardView to update whenever a change is detected, and I have verified that my viewmodel is indeed updating the values - they're just not translating into my view.

            Please note: I have also tried this solution using a managed collection of custom defined Structs instead of the literal dictionaries presented in my example. Despite that, the bug I am describing still persisted - so I am sure that is not the issue. I did this because I thought it would guarantee firing objectWillChange, but I wonder if I am actually running into a weird quip with SwiftUI.

            I am using Xcode Version 13.2.1, Swift5.1, and running on iOS15 iPhone 11 simulator.

            Content view:

            ...

            ANSWER

            Answered 2022-Mar-20 at 20:54

            We don’t init objects in body. It has to either be a singleton if the model’s lifetime is of the app or as a @StateObject if the model’s lifetime should be tied to a view. In your case it’s the latter, however for these kind of loader/fetcher objects we don’t usually use environmentObject because usually they aren’t shared in deep view struct hierarchies.

            Note that ObservableObject is part of the combine framework so if your fetching isn’t using Combine then you might want to try using the newer async/await pattern and if you pair it with SwiftUI’s task modifier then you don’t even need an object at all!

            Source https://stackoverflow.com/questions/71549481

            QUESTION

            Need to get the specific data from a column and to transpose them to the rows using Python & Pandas
            Asked 2021-Nov-10 at 15:18

            Help me to attain the output using Python and Pandas
            Input:

            ...

            ANSWER

            Answered 2021-Nov-10 at 15:18

            QUESTION

            How can I replace/delete a very long part of a string in a table column?
            Asked 2021-Apr-21 at 16:19

            This morning I found that a column in my SQL Server 2016 database has been corrupted somehow.

            I have about 900 rows with a variation of this odd looking string:

            ...

            ANSWER

            Answered 2021-Apr-21 at 16:15

            Please try the following solution.

            I am assuming that not needed part is always at the end of the column value.

            If everything is okay, it is easy to convert it to an UPDATE statement.

            SQL

            Source https://stackoverflow.com/questions/67198545

            QUESTION

            Reading Quip Spreadsheet with quip-api and pandas
            Asked 2021-Feb-08 at 15:08

            I have started exploring Quip API.

            I have created a spreadsheet in Quip with the below details:

            1. Added title of the spreadsheet
            2. Added below data in the spreadsheet:
            id name 1 harry 2 hermione 3 ron

            And here is how I am trying to read from Quip:

            ...

            ANSWER

            Answered 2021-Feb-08 at 15:08

            Quip automatically pulls in a number of extra blank columns and rows with \u200b unicode characters.

            This is how I've resolved this:

            Source https://stackoverflow.com/questions/65585084

            QUESTION

            Flutter - dynamic TextEditingControllers, binding to another input field
            Asked 2020-Oct-28 at 13:17

            The code below works, copy and paste it in to run. I need some guidance though on what I need to do next. My main query here is:

            I'm generating the number of TextFields with the list of questions I define. when I hit the + button, that then prints my answers to the console. What I want to be able to do is link my loggedinuser (not defined in this code, but lets just say "me" on line 23) with the unique question identifier, and the answer to the unique question identifier. I don't need to check if the answer is correct at this moment. What do I need to do create that structure?

            {user, uniqueQuestionIdentifier, answer}

            ...

            ANSWER

            Answered 2020-Oct-28 at 13:17

            basically i have changed list to Map and adding qid as key. when you are printing you will get key and value. from the key which is qid you can get the question details and from value you will have as answers.

            Source https://stackoverflow.com/questions/64572318

            QUESTION

            How to make filter/search bar search only when 3 characters has been entered?
            Asked 2020-Jul-25 at 17:31

            I have here a search bar from w3schools website which I have tweaked.

            Right now, it will show all results at the first letter entered which is slowing down my site since there's more than 5000+ results in one go.

            I wonder how can I make this search ONLY after 3 (or 4-5) characters/letters have been inputted?

            Here's the DEMO

            Here's the script so far:

            ...

            ANSWER

            Answered 2020-Jul-25 at 17:31

            QUESTION

            Importing data into Quip spreadsheet via API
            Asked 2020-Jul-14 at 13:59

            My task is to write into a Quip Spreadsheet some chunks of data and regularly update it using Quip API. I got the data stored in pandas DataFrame (and can easily convert to any other structure), but the whole issue is around using their API. I got through painful authorisation process so now it generally works, but I can't find any proper method to update lines of the spreadsheet.

            I've found a method

            ...

            ANSWER

            Answered 2020-Jul-14 at 13:59

            Ok, if somebody would need it:

            1. you parse the web representation of QUIP doc to extract cells IDs. Use BeautifulSoup for instance
            2. Than just iterate through those IDS with

            Source https://stackoverflow.com/questions/62831188

            QUESTION

            How to extract sentences with key phrases in spaCy
            Asked 2020-Jul-08 at 15:57

            I have worked with Spacy and so far, found very intuitative and robust in NLP. I am trying to make out of text sentences search which is both ways word base as well as content type base search but so far, I would not find any solution with spacy.

            I have the text like:

            In computer science, artificial intelligence (AI), sometimes called machine intelligence, is intelligence demonstrated by machines, unlike the natural intelligence displayed by humans and animals. Leading AI textbooks define the field as the study of "intelligent agents": any device that perceives its environment and takes actions that maximize its chance of successfully achieving its goals.[1] Colloquially, the term "artificial intelligence" is often used to describe machines (or computers) that mimic "cognitive" functions that humans associate with the human mind, such as "learning" and "problem solving".[2]

            As machines become increasingly capable, tasks considered to require "intelligence" are often removed from the definition of AI, a phenomenon known as the AI effect.[3] A quip in Tesler's Theorem says "AI is whatever hasn't been done yet."[4] For instance, optical character recognition is frequently excluded from things considered to be AI,[5] having become a routine technology.[6] Modern machine capabilities generally classified as AI include successfully understanding human speech,[7] competing at the highest level in strategic game systems (such as chess and Go),[8] autonomously operating cars, intelligent routing in content delivery networks, and military simulations[9].

            Artificial intelligence was founded as an academic discipline in 1955, and in the years since has experienced several waves of optimism,[10][11] followed by disappointment and the loss of funding (known as an "AI winter"),[12][13] followed by new approaches, success and renewed funding.[11][14] For most of its history, AI research has been divided into sub-fields that often fail to communicate with each other.[15] These sub-fields are based on technical considerations, such as particular goals (e.g. "robotics" or "machine learning"),[16] the use of particular tools ("logic" or artificial neural networks), or deep philosophical differences.[17][18][19] Sub-fields have also been based on social factors (particular institutions or the work of particular researchers).[15]

            Now, I want to extract the sentences complete in multiple with multiple words or string matching. E.g., i want to search intelligent and machine learning. and it prints all complete sentences which contain this single or both given strings.

            Is there any way that importing model of spacy with spacy can sense the phrase match .. like it finds all the intelligent and machine learning containing words and print that ? and also with other option, can it also finds as with search machine learning, also suggests deep learning, artificial intelligence, pattern recognition etc?

            ...

            ANSWER

            Answered 2020-Jul-07 at 17:01

            Part 1:

            i want to search intelligent and machine learning. and it prints all complete sentences which contain this single or both given strings.

            This is how you can find complete sentences that contain your keywords that you are looking for. Keep in mind that sentence boundaries are determined statistically, and hence, and it would work fine if the incoming paragraphs are from news or wikipedia, but it wouldn't work as well if the data is coming from social media.

            Source https://stackoverflow.com/questions/62776477

            QUESTION

            Python Text RPG: How to Save/Load
            Asked 2020-Jun-24 at 22:54

            Please forgive me in advance if I'm doing this wrong, I'm an absolute beginner to both programming and stack overflow. I'm using Python 3.8.3 to create a text RPG, and I'm happy with how it's turning out so far. However, I've reached the point where I need to add a save/load game feature. The game works just fine, but as expected, it wipes all progress every time you run the program.

            Here is my start menu where the Load option needs to go:

            ...

            ANSWER

            Answered 2020-Jun-24 at 21:35

            I think json would be a good choice for this.

            Saving code:

            Source https://stackoverflow.com/questions/62564224

            QUESTION

            How do I show a Jekyll Collection item on a specific date? (Liquid syntax issue?)
            Asked 2020-Jun-18 at 23:24

            I guess the most basic question I have is why does using a number at the beginning of a Liquid if statement seem not to work.

            This works:

            ...

            ANSWER

            Answered 2020-Jun-18 at 23:24

            This is happening because the front matter is YAML, and YAML might be more clever than you thought it would.

            Source https://stackoverflow.com/questions/62440795

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install quip

            In the future will will provide binaries for a number of operating systems. In the mean time, you must install from source.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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            CLONE
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            https://github.com/dcjones/quip.git

          • CLI

            gh repo clone dcjones/quip

          • sshUrl

            git@github.com:dcjones/quip.git

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