FILET | Software for detecting introgression | Machine Learning library

 by   kr-colab C Version: Current License: GPL-3.0

kandi X-RAY | FILET Summary

kandi X-RAY | FILET Summary

FILET is a C library typically used in Artificial Intelligence, Machine Learning applications. FILET has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

This directory contains all of the code necessary to run FILET (Finding Introgressed Loci using Extra-Trees). Briefly, this tool uses an Extra-Trees classifier (Geurts et al. 2005: to classify genomic windows from a as one of three different modes of evolution based on population genomic data from a phased two-species sample:. The manuscript describing FILET will be posted on biorxiv shortly, at which point I will add the link to this README. Meanwhile, you can check out this talk for a brief overview of the method and results from an application to Drosophila simulans and D. sechellia: In order to run FILET, the user will need several python packages, including scikit-learn (scipy (and numpy (The simplest way to get all of this up and running is to install Anaconda (which contains these and many more python packages and is very easy to install. You will also need GCC (and GSL (The FILET pipeline should then work on any Linux system (and probably OS X too, though this has not yet been tested).
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            kandi-support Support

              FILET has a low active ecosystem.
              It has 9 star(s) with 2 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 5 have been closed. On average issues are closed in 2 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of FILET is current.

            kandi-Quality Quality

              FILET has no bugs reported.

            kandi-Security Security

              FILET has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              FILET is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              FILET releases are not available. You will need to build from source code and install.

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of FILET
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            FILET Key Features

            No Key Features are available at this moment for FILET.

            FILET Examples and Code Snippets

            No Code Snippets are available at this moment for FILET.

            Community Discussions

            QUESTION

            preg_split returns a non expected number
            Asked 2021-May-24 at 09:53

            my first question, so please be patient with me...

            I have this string:

            "Create a script which will take a string and analyse it to produce the following stats. Spicy jalapeno bacon ipsum dolor amet kevin buffalo frankfurter, sausage jerky pork belly bacon. Doner sausage alcatra short loin, drumstick ham tenderloin shank bresaola porchetta meatball jowl ribeye ground round. Ribeye pork loin filet mignon, biltong shoulder short ribs tongue ball tip drumstick ground round rump pork chop. Kielbasa bacon strip steak andouille ham short ribs short loin venison frankfurter spare ribs doner corned beef."

            I used this function:

            ...

            ANSWER

            Answered 2021-May-24 at 09:45

            Actually, you need to exclude the last string that include nothing thats why it was returning 0 words in it. You can use the following code.

            Source https://stackoverflow.com/questions/67669785

            QUESTION

            How to run separate instances of a Python Telegram Bot?
            Asked 2021-May-20 at 13:10

            Currently, I have created a Python bot with buttons that can be pressed to add orders to a list of orders, as shown below:

            Sample of the Telebot's Buttons and the List

            My bot is in separate chat groups, Chat 1 and Chat 2. When I press a button to add the order in Chat 1, the order is also added in Chat 2.

            How do I separate the instances of the bot such that adding orders in Chat 1 does not affect the order list of Chat 2?

            Code for the data:

            ...

            ANSWER

            Answered 2021-May-20 at 13:02

            You can use this code:

            Source https://stackoverflow.com/questions/67620254

            QUESTION

            Vertical scroll in card doesn't go all the way
            Asked 2021-Apr-30 at 09:07

            I am trying to create a results page where each result is in a card, and inside the card, there are nested information such as menu and name. I want the menu part to be vertically scrollable, but for some reason, the last card doesn't scroll all the way down. I don't want the card to be scrollable, just the menu part.

            HTML:

            ...

            ANSWER

            Answered 2021-Apr-30 at 09:07

            In every group of item-containers, the last divs are crushing because you set max-height for them.

            In the .result class, you're setting;

            Source https://stackoverflow.com/questions/67311175

            QUESTION

            How can i call my function from my main form in another form without this error in vb.net
            Asked 2021-Apr-29 at 10:08

            I am currently developping an app WinForm using vb.net and i have to call a function, situated in my main form, in another form. Here is my function in my main form

            ...

            ANSWER

            Answered 2021-Apr-29 at 10:08

            Application.OpenForms("Main") is returning Nothing because at the time it is called (when Form2 is created) , there is no open form named Main in the collection. This Nothing then persists until you try and use it. You can't call a method on Nothing. Even if you later ensure there is a form named Main in the OpenForms collection, it doesn't alter the fact that at the time you looked (and captured) there was nothing

            Move the code to just before you need it

            Source https://stackoverflow.com/questions/67313323

            QUESTION

            addEventlistener for buttons does not work properly with more than one button
            Asked 2021-Apr-11 at 17:56

            I want to create a script where I can upload files via event listener drop.

            Everytime a file is dropped, a new table row has to be created with a save/edit button. These buttons need event listeners for click, but the problem is that the event listener works only on the last button added to the table.

            I have made a simplified example of my problem. The function clickEventSaveButton() contains an .addEventlistener, with an anonymous function. For now it just executes a console log, but only for the button in the last table row. Everytime a new button is created, the old one stops working.

            JS:

            ...

            ANSWER

            Answered 2021-Apr-11 at 17:56

            So, thanks to Patrick Evans I was able to solve the issue that bugged me for some hours.

            Instead of innerHTML I have to use insertAdjacentHTML.

            Solution:

            Source https://stackoverflow.com/questions/67048038

            QUESTION

            In CSS Grid how to remove column 1's matching height of column 2?
            Asked 2021-Apr-08 at 19:39

            Not familiar with CSS Grid I'm trying to create a two column layout. Per reading tutorials it was suggested to use minmax() but for some reason I cannot figure out how to break column 1's full height that matches column 2, example:

            ...

            ANSWER

            Answered 2021-Apr-08 at 19:23

            You can't stop the columns being equal height but you can align the content of the columns so it does not achieve the default 100% height.

            Note that the row will still have the same height but this has the visual appearance you seem to be after.

            Source https://stackoverflow.com/questions/67010527

            QUESTION

            How to sort a dataframe with strings
            Asked 2021-Apr-02 at 23:22

            I got an code running that imports an excel file, and i want to be able to sort some of the data in it and write it to a new excel file. I got the code working somewhat as I want, but can't make it sort the values as wanted... I want to sort the df from the column named "Varetekst"(Sorry for not written in english!) How can I sort the df from a column containing strings? I have tried multiple solutions and I think maybe the problem is that the column are a obj and not a str.

            ...

            ANSWER

            Answered 2021-Apr-02 at 23:22

            Sorting does not get saved in place by default (as with pandas operations in general).

            Either set inplace=True:

            Source https://stackoverflow.com/questions/66925046

            QUESTION

            Java binary literal: "Long number too large."
            Asked 2021-Mar-22 at 23:21

            So I am writing a chess engine. I have separate method for each piece's moves, which return a long array of size 2, including the long representation of move mask and also attack mask. The problem is that for some reason, when the piece move method generates a long with the index(s) set towards the MSB, my other methods are inconsistent with this input. Here is the code with the example being the knight.

            ...

            ANSWER

            Answered 2021-Mar-22 at 23:21

            1000000000000000000000000000000000000000000000000000000000000000

            This is clearly written in binary representation. You asked for this, by using Long.toBinaryString(pieceBoard).

            When you write this java code:

            Source https://stackoverflow.com/questions/66754833

            QUESTION

            How can I change filegroup location?
            Asked 2021-Feb-28 at 09:10

            I used filetable for storing files in my project. now I want to change the filegroup location and move it to another drive. How can I do this?

            ...

            ANSWER

            Answered 2021-Feb-28 at 09:10

            There is two maners.

            1. First dettach the database, move the files, and then reattach the db
            2. Second create a new file in the filegroup, and use the command DBCC SHRINKFILE (...) with the EMPTY option, then drop the empty file

            FIRST :

            Source https://stackoverflow.com/questions/66403296

            QUESTION

            Save contents of a modal popup in R shiny
            Asked 2021-Jan-27 at 11:15

            I have the below code for Modal Popup and I'm able to edit the contents of the popup. But I would like to save the edited contents into a file,

            ...

            ANSWER

            Answered 2021-Jan-27 at 11:15

            You can use such an observer:

            Source https://stackoverflow.com/questions/65911721

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install FILET

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • HTTPS

            https://github.com/kr-colab/FILET.git

          • CLI

            gh repo clone kr-colab/FILET

          • sshUrl

            git@github.com:kr-colab/FILET.git

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