ssw | Python interface for SIMD Smith-Waterman Library

 by   vishnubob C Version: Current License: Non-SPDX

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Python interface for SIMD Smith-Waterman Library
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            ssw Key Features

            No Key Features are available at this moment for ssw.

            ssw Examples and Code Snippets

            Filling missing values with mean in pyspark
            Pythondot img1Lines of Code : 28dot img1License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            from pyspark.sql import functions as F, Window
            
            df = spark.read.csv("./weatherAUS.csv", header=True, inferSchema=True, nullValue="NA")
            
            exclude = ["date", "location"] + ["mintemp", "maxtemp", "evaporation", "sunshin
            How to divide wind Direction to angles to create wind-rose python plotly
            Pythondot img2Lines of Code : 6dot img2License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            bins = np.linspace(0, 360, 17)+11.25
            bins = np.insert(bins, 0, 0)
            names = ['N','NNE','NE','ENE','E','ESE','SE','SSE','S','SSW','SW','WSW','W','WNW','NW','NNW', 'N2']
            df['wind_dir_Range'] = pd.cut(df['WD'], bins, labels=names)
            df['wind_dir_
            How can I iterate through a JSON response and append into a data frame?
            Pythondot img3Lines of Code : 20dot img3License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            data = api_response1['historical']
            df = pd.DataFrame.from_records([
                     {
                         'date': date,
                         'time': f"{int(observation['time'])//100:0>2}:00:00",
                         'precip': float(observation['precip'])
                     }
            
            Try to search the forecast of cities with space in the name. Openweathermap API Django Python
            Pythondot img4Lines of Code : 4dot img4License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            import urllib.parse
            
            city = urllib.parse.quote_plus(request.POST['city'])
            
            Is there a way to add a file which has similar ids to a dictionary?
            Pythondot img5Lines of Code : 11dot img5License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            l = defaultdict(list)
            
            def grades(path):
                l= defaultdict(list)
                g = {"A":4.0,"A-":3.75,"B+":3.25,"B":3.0,"B-":2.75,"C+":2.25,"C-":0,"D+":0,"D":0,"D-":0,"F":0}
                for id, course, grade, prof_id in file_reader(
            PySpark getting a StructType output for calculating distribution from a list
            Pythondot img6Lines of Code : 28dot img6License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            from pyspark.sql import functions as F, Window
            
            result = my_df.withColumn(
                'all_classes',
                F.collect_list('Class').over(Window.partitionBy('A', 'C'))
            ).groupBy(
                'A', 'C', 'all_classes', 'Class'
            ).agg(
                F.count('Class').alias(
            PySpark getting a StructType output for calculating distribution from a list
            Pythondot img7Lines of Code : 24dot img7License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            from pyspark.sql import Window
            from pyspark.sql import functions as F
            
            df1 = df.withColumn("cnt", F.count("*").over(Window.partitionBy("A", "C", "Class"))) \
                .groupBy("A", "C") \
                .agg(
                F.map_from_entries(
                    F.collect_set(
            How to count unique data occuring in multiple categorical columns from a pyspark dataframe
            Pythondot img8Lines of Code : 3dot img8License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            df = train_file.join(test_file, on=['A', 'C'], how='left_outer')
            group_df = df.groupBy(['A', 'C']).agg(f.count('class'))
            
            Update nested dict with missing key value pairs
            Pythondot img9Lines of Code : 13dot img9License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            cardinal_positions = [
                "N", "NNE", "NE", "ENE", "E", "ESE", "SE", "SSE",
                "S", "SSW", "SW", "WSW", "W", "WNW", "NW", "NNW"
            ]
            
            def fill_missing_keys(the_huge_dict):
                """Fills in missing cardinal positions with 0"""
            
                for inner_
            Unique lists within list of lists if those lists have list as one of the elements
            Pythondot img10Lines of Code : 11dot img10License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            res = []
            for inner_list in l:
                inner = []
                for el in inner_list:
                    if type(el) == list:
                        inner.extend(el)
                    else:
                        inner.append(el)
                if not (inner in res):
                    res.append(inner)
            

            Community Discussions

            QUESTION

            Getting latitude and longitude from a json file to create a map
            Asked 2022-Mar-24 at 16:39

            I wanted to modify apple's earthquakes project to display a map together with the location magnitude and time. In the json file I can see the coordinates but for the life of me I cannot read them and use them as latitude and longitude for the map. I succeeded to display the map by using the address (title) but the format changes and there are too many possibilities to account for. The earthquake project can be downloaded at https://developer.apple.com/documentation/coredata/loading_and_displaying_a_large_data_feed I post the Quake.swift file below so you may have an idea of what I tried. I added a coordinates characteristic to their magnitude, place and time first as an array and then as a string but I always fail to read it and use it to display the map as latitude and longitude.

            Thanks in advance for your help.

            The json file is long so I post a few lines here to give you an idea of the format:

            ...

            ANSWER

            Answered 2022-Mar-24 at 16:39

            The coordinates are not on the same level as properties, they are in a sibling geometry. The basic pattern is

            Source https://stackoverflow.com/questions/71600283

            QUESTION

            Powershell: The property 'WorkingDirectory' cannot be found on this object (WIN10 - 18363) but exist
            Asked 2022-Mar-10 at 23:22

            Hy, i try to use powershell to automate some scheduling tasks Should start a cmd.exe in a specific directory.

            Unfortunately it returns an error on a specific property

            Property: TaskName.Actions.WorkingDirectory

            ...

            ANSWER

            Answered 2022-Mar-10 at 23:22

            As the name of the property suggests, $Task.Actions contains a collection of values (even if in a given situation that collection contains just one element).

            PowerShell's member-access enumeration feature allows you to use property access (.WorkingDirectory) on a collection to get the property values of its elements - that is why $Task.Actions.WorkingDirectory succeeded - but not also to set property values - that is why $Task.Actions.WorkingDirectory = ... failed.

            You solution options are:

            • If you know that .Actions contains only one action, simply use [0] to access the one and only element:

            Source https://stackoverflow.com/questions/70456005

            QUESTION

            Displaying accented characters using VBA in PowerPoint
            Asked 2022-Jan-17 at 03:17

            I have created a PowerPoint to display 5 random words from a .txt file following this excellent tutorial.

            The problem is, the words in my .txt file are Spanish, so have accents on them. When PowerPoint displays them, they look corrupt. For example Perú looks like Perð.

            This is my code:

            ...

            ANSWER

            Answered 2022-Jan-17 at 03:17

            VBA and COM use Unicode internally. But when interacting with the Windows API VBA uses ANSI as Windows 9x didn't have Unicode API calls.

            The Open statement is depreciated. It will be calling Windows' CreateFileA. Using the FileSystemObject. https://docs.microsoft.com/en-us/office/vba/language/reference/user-interface-help/openastextstream-method

            Make sure you specify Unicode when opening the file.

            OR set your non Unicode settings to Spanish or something.

            Source https://stackoverflow.com/questions/70732949

            QUESTION

            Can I bound an st_distance call by a polygon?
            Asked 2021-Aug-18 at 15:15

            I have seen similar posts on this topic (see, for example, here and here) but not one that is specific to the sf-tidyverse ecosystem.

            I have a series of lakes, a series of sample points within each lake, and a "focal point" in each lake that represents where a boat launch is. I want to calculate the "boater's shortest travel distance" to each sample point from the boat launch. However, I want to somehow "bound" these distances using the lake polygon such that distances cannot be calculated across land. I could imagine this being done by having the "straight line" snake along the lake edge for as long as needed before it can resume being a straight line. I could also imagine the "straight line" being decomposed into line segments that bend around any intervening land. I'm open to a variety of implementations!

            I have seen elsewhere (such as here) the idea of converting the bounding polygon to a raster, making the water one value and the land another, much higher value, and then doing a "least-cost distance," where the cost of going over land is prohibitive. However, I don't know how one would actually do this in the raster/sf ecosystem.

            Here's the code I used to make this map:

            ...

            ANSWER

            Answered 2021-Aug-18 at 15:15

            Here's a solution using sfnetworks, which fits in with the tidyverse well.

            The code below should

            • regularly sample the bounding box of the lake (creates evenly-spaced points)
            • connect them to their closest neighbors
            • remove the connections that cross land
            • find the shortest path from the boat launch to the sample location(s) by following the lines that remain.

            The results are not exact, but are pretty close. You can increase precision by increasing the number of sampled points. 1000 points are used below.

            Source https://stackoverflow.com/questions/68596244

            QUESTION

            How to divide wind Direction to angles to create wind-rose python plotly
            Asked 2021-Jun-28 at 15:05

            here i divided wind direction(0 to 360 degrees) to 16 groups('N','NNE','NE','ENE','E','ESE','SE','SSE','S','SSW','SW','WSW','W','WNW','NW','NNW'). In my code N is -1 to 22.5 but in reality it should be between 348.75(360-11.25) and 11.25. To check my results I plotted windrose using Python Windrose package and python plotly px.bar_polar.

            Windrose with windrose package (pip install windrose) :

            ...

            ANSWER

            Answered 2021-Jun-28 at 15:05

            If I have understood it correctly, your problem is about creating 16 bins with one bin ranging from 348.75 to 11.25.

            To solve the problem you can create 17 bins. The first bin ranges from 0 to 11.25, the last one from 348.75 to 360.

            As pd.cut() requires that each bin has an unique label, you must name the last bin different than the first one despite they represent the same direction, i.e. label them N and N2. In an additional step after binning, you can then rename N2 to N.

            Source https://stackoverflow.com/questions/68083038

            QUESTION

            How can I iterate through a JSON response and append into a data frame?
            Asked 2021-Jun-17 at 20:54

            I'm using the Weatherstack API to get historical precipitation data at one hour intervals. The response is a nested dictionary.

            Input:

            ...

            ANSWER

            Answered 2021-Jun-17 at 20:54

            QUESTION

            Is there a way to loop through JSON data and display it in HTML
            Asked 2021-May-28 at 13:28

            I am trying to great a weather app using The Weather API. I have managed to get the information that I need from the JSON and display it in HTML.

            I would not like to get the hourly weather from the JSON and display it from each hour. I thought about doing this within a loop and displaying it that way but am unsure how to write it.

            Here is the JSON

            ...

            ANSWER

            Answered 2021-May-27 at 10:14

            QUESTION

            Is there a programmatic way to elaborate the 'half-winds' in raku?
            Asked 2021-May-17 at 18:25

            I have this working:

            ...

            ANSWER

            Answered 2021-Jan-22 at 22:26

            FWIW, in this case I would go for readability of the code, which I think your original code is the most readable you can get.

            But if you want to get algorithmic, I would work off of the @halfs using an array slice using a sequence:

            Source https://stackoverflow.com/questions/65853009

            QUESTION

            htaccess short url with emoving forward slash
            Asked 2021-May-13 at 10:29

            my .htaccess:

            ...

            ANSWER

            Answered 2021-May-13 at 10:19

            Remove $ and use a negate character class like [^/]+:

            Source https://stackoverflow.com/questions/67517482

            QUESTION

            How to replace Missing Value with Mode
            Asked 2021-May-13 at 08:03
            data <- c("SW",  "E",   "N",   "WNW", "SSE", "SE",  "SE",  "SE",  "E",   "S",   "SE",  "E",   "S",  
             "WNW", "S",   "SE",  "WSW","SW", "NNE","NNW","N",  "ENE","S",  NA ,"SSE","E", 
             "E",  "S",  "SE", "SSW","E",  "E",  "WNW","NW", "ESE","ESE","NW", "E",  NA)
            
            ...

            ANSWER

            Answered 2021-May-13 at 07:43

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ssw

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