Cancer Prediction Using Data Mining using reusable libraries
by sarvan 
Updated: Sep 1, 2021
Solution Kit
Around the globe, people seek the help of doctors when they are ill, but they are not available due to some reason. The Cancer Disease Prediction application is end-user support and online consultation treatment. The application allows user to share their health-related metrics for cancer prediction, which processes patient details to check for various conditions that could be associated. We can use intelligent data mining techniques to guess the most accurate state of a patient's details. Various steps involved in this kit are: 1. Data Preparation 2. Data Mining 3. Pattern Recognition 4. Knowledge Representation Based on the result, the system automatically shows the result-specific doctors for further treatment. The system allows users to view doctor's details. Listed below are the best libraries that can help data mining and build a prediction system for cancer.
Pattern Recognition
ISIC2018by chvlyl
28 Version:CurrentLesion attributes segmentation for melanoma detection with multi-task U-Net
ISIC2018by chvlyl
Python 28 Version:Current License: Permissive (MIT)
PyFeat-2.xby mrzResearchArena
7 Version:v2.0.0Biological Feature Representation Tool form the Sequences
PyFeat-2.xby mrzResearchArena
Python 7 Version:v2.0.0 License: Strong Copyleft (GPL-3.0)
SigProfilerExtractorby AlexandrovLab
126 Version:v1.1.4SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
SigProfilerExtractorby AlexandrovLab
Python 126 Version:v1.1.4 License: Permissive (BSD-2-Clause)
treeomicsby reiterlab
39 Version:v1.9.2Decrypting somatic mutation patterns to reveal the evolution of cancer
treeomicsby reiterlab
Python 39 Version:v1.9.2 License: Strong Copyleft (GPL-3.0)
Data Mining
2020plusby KarchinLab
43 Version:v1.2.2Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
2020plusby KarchinLab
Python 43 Version:v1.2.2 License: Permissive (Apache-2.0)
genome-nexusby genome-nexus
39 Version:v1.2.10Backend server for Genome Nexus
genome-nexusby genome-nexus
Java 39 Version:v1.2.10 License: Permissive (MIT)
medical_analysis_machine_learningby eddieir
4 Version:CurrentThis repo is dedicated to the medical reserach for skin and breast cancer and brain tumor detection detection by using NN and SVM and vgg19
medical_analysis_machine_learningby eddieir
Python 4 Version:Current License: Permissive (MIT)
BandWagonby Edinburgh-Genome-Foundry
11 Version:v0.3.1🎺 Plot DNA digestion band patterns with Python
BandWagonby Edinburgh-Genome-Foundry
Python 11 Version:v0.3.1 License: Permissive (MIT)
CLOBNETby isoviita
1 Version:CurrentMachine learning for clinical data mining
CLOBNETby isoviita
JavaScript 1 Version:Current License: Permissive (BSD-2-Clause)
cgtdby cancergenetrust
37 Version:v0.2.0Decentralized distributed database of genomic and clinical data.
cgtdby cancergenetrust
Python 37 Version:v0.2.0 License: Permissive (Apache-2.0)
Histopathologic-Cancer-Detectionby ace19-dev
4 Version:CurrentKaggle Competition: Identify metastatic tissue in histopathologic scans of lymph node sections
Histopathologic-Cancer-Detectionby ace19-dev
Python 4 Version:Current License: Permissive (MIT)
Data preparation
SONDYby AdrienGuille
57 Version:v1.0-alpha1An open source social media data mining software (event detection + influence analysis)
SONDYby AdrienGuille
Java 57 Version:v1.0-alpha1 License: Strong Copyleft (GPL-3.0)
label-makerby developmentseed
415 Version:0.9.1Data Preparation for Satellite Machine Learning
label-makerby developmentseed
Python 415 Version:0.9.1 License: Permissive (MIT)
pretrain-vl-databy lichengunc
31 Version:CurrentPre-trained V+L Data Preparation
pretrain-vl-databy lichengunc
Python 31 Version:Current License: Permissive (MIT)
Learn2Cleanby LaureBerti
21 Version:CurrentLearn2Clean: Optimizing the Sequence of Tasks for Data Preparation and Cleaning
Learn2Cleanby LaureBerti
Python 21 Version:Current License: Permissive (BSD-3-Clause)
automated-data-preprocessingby mdkearns
18 Version:v1.0.0-betaA command-line utility program for automating the trivial, frequently occurring data preparation tasks: missing value interpolation, outlier removal, and encoding categorical variables.
automated-data-preprocessingby mdkearns
Python 18 Version:v1.0.0-beta License: Permissive (MIT)
discovery-spark-engineby metatron-app
9 Version:CurrentA REST server for spark jobs from metatron discovery data preparation.
discovery-spark-engineby metatron-app
Java 9 Version:Current License: Permissive (Apache-2.0)
GCBM.Chile.Data_Preprocessingby moja-global
1 Version:v0.9.1This repo contains all the data preparation tools used to implement the GCBM in Chile
GCBM.Chile.Data_Preprocessingby moja-global
R 1 Version:v0.9.1 License: Weak Copyleft (MPL-2.0)
Knowledge Representation
knowledge_representation_pytorchby jimmywangheng
292 Version:CurrentSeveral knowledge graph representation algorithms implemented with pytorch
knowledge_representation_pytorchby jimmywangheng
Python 292 Version:Current License: Permissive (MIT)
artificial-guyby sunil3590
20 Version:CurrentNatural Language Processing + Knowledge Representation + Reasoning + Natural Language Generation
artificial-guyby sunil3590
Java 20 Version:Current License: Permissive (MIT)
Fast-TransXby thunlp
350 Version:CurrentAn Efficient implementation of TransE and its extended models for Knowledge Representation Learning
Fast-TransXby thunlp
C++ 350 Version:Current License: Permissive (MIT)
Visualizerby ER-Visualizer
9 Version:CurrentEmergency room simulator which is highly configurable and can simulate a broad range of scenarios. It can be used by medical professionals/researchers to determine bottlenecks and areas in the emergency room which would benefit most from added resources.
Visualizerby ER-Visualizer
JavaScript 9 Version:Current License: Permissive (MIT)
ReGraphby Kappa-Dev
62 Version:CurrentTool for building graph-based hierarchical knowledge representation systems
ReGraphby Kappa-Dev
Python 62 Version:Current License: Permissive (MIT)