BandWagon | Plot DNA digestion band patterns with Python | Genomics library

 by   Edinburgh-Genome-Foundry Python Version: 0.3.2 License: MIT

kandi X-RAY | BandWagon Summary

kandi X-RAY | BandWagon Summary

BandWagon is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. BandWagon has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install BandWagon' or download it from GitHub, PyPI.

🎺 Plot DNA digestion band patterns with Python
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            kandi-support Support

              BandWagon has a low active ecosystem.
              It has 11 star(s) with 2 fork(s). There are 5 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              BandWagon has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of BandWagon is 0.3.2

            kandi-Quality Quality

              BandWagon has no bugs reported.

            kandi-Security Security

              BandWagon has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              BandWagon is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              BandWagon releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed BandWagon and discovered the below as its top functions. This is intended to give you an instant insight into BandWagon implemented functionality, and help decide if they suit your requirements.
            • Plot all digest patterns
            • Set label
            • Plot the pattern
            • Merge two dictionaries
            • Computes the residue sizes for a given sequence
            • Plot the band
            • Plots the UNCUT
            • Draw the background color on the given axis
            • Plot bands
            • Plots the enriched records
            • Annotate a record of enzyme bands
            • Format a DNA size
            • Add features to a record
            • Use setuptools
            • Extract all the members of the archive
            • Builds a setuptools egg
            • Plot band
            • Plots the label
            • Creates a ladder from Aatia calibration table
            • Create a custom ladder pattern
            • Load a single record
            • Set the topology
            • Build command line arguments
            • Parse command line options
            • Install Setuptools
            • Compute a list of residues in the DNA sequence
            • Download setuptools
            Get all kandi verified functions for this library.

            BandWagon Key Features

            No Key Features are available at this moment for BandWagon.

            BandWagon Examples and Code Snippets

            No Code Snippets are available at this moment for BandWagon.

            Community Discussions

            QUESTION

            Why to use strict comparison in string status checking?
            Asked 2021-May-31 at 19:21

            I oftentimes see answers using strict comparison (===) instead of normal comparison (==) on status checking, i.e. here:

            ...

            ANSWER

            Answered 2021-May-31 at 18:42

            I would recommend always using '===' instead of '==' when strict equality checking is required, which it is in most cases, for this reason: it declares intent. When I see code with '===', I will read it as 'a must be referentially or primitively equal to b'. When I see '==', I will read it as 'a must be coercibly equal to b'. From that, I will judge what kind of goal the code / original programmer is trying to accomplish and how they are passing data around to get the job done. Essentially, it yields insight into the context of the application, the way data is being passed around, and how this function / method / code block fits into the picture.

            With that being said, if I see someone do 'a == b' when they are both strings, I'm not going to get on any high horse and make a fuss about it.

            Source https://stackoverflow.com/questions/67778787

            QUESTION

            node --experimental-modules, requested module does not provide an export named
            Asked 2020-Feb-12 at 22:48

            I've installed Node 8.9.1 (same problem happens in v10.5.0).

            I'm trying to use named imports from npm packages in a file with the .mjs

            ...

            ANSWER

            Answered 2017-Nov-14 at 05:42

            You have to use .mjs extension.

            Once this has been set, files ending with .mjs will be able to be loaded as ES Modules.

            reference: https://nodejs.org/api/esm.html

            Update:

            Looks like you haven't export the method yet.

            Suppose i have hello.mjs with content

            Source https://stackoverflow.com/questions/47277887

            QUESTION

            Basic Global State with React Hooks in React Native
            Asked 2019-Nov-18 at 13:18

            I've been jumping on the React Hooks bandwagon and decided to roll a React Native app together to try and give a full redux/global state implementation a shot. I've been following some articles on how to go about it, but I do have some questions.

            I understand the concepts of useState and useReducer, but I'm getting hung up on the Context side of things.

            First question: What is the best way to pass a state object down the tree without having to use props? Here's what I have so far. Normally, without Navigation, you would have a child component of DispatchContext that would receive props. But since I do have Navigation, I don't really want to pass the state down the tree. I feel that defeats the purpose of Context and hooks in general. I've seen some things where the value={dispatch} is value={{somePieceOfState}}. How can I pass both the state and the dispatch into the component tree?

            ...

            ANSWER

            Answered 2019-May-30 at 16:46

            Your error is that you are confusing an action creator with an action. An action creator, as the name implies, creates an action when it is invoked. In your case, you are dispatching an action creator instead of dispatching an action. You must invoke the function first.

            Source https://stackoverflow.com/questions/56371147

            QUESTION

            Unexpected Keyword when I Pass Url Parameter
            Asked 2019-Sep-25 at 07:42

            I have a view called 'Teams' that loops through different NBA teams in a dictionary and shows their name and logo. When the user clicks on one of these logos, I want them to be taken to the 'TeamDetailView'. This should carry over the chosen team's city/name/logo, and I can see this information being passed in the URL. When I attempt to load the team's individual page, though, it gives me a type error and says that

            ...

            ANSWER

            Answered 2019-Sep-25 at 01:43

            Have you tried updating your TeamDetailView function to accept the url parameters? Something like -

            Source https://stackoverflow.com/questions/58089835

            QUESTION

            Material Design Icon - supported upstream
            Asked 2019-Aug-12 at 09:09

            Roughly two years ago (2017) we decided to use the material design icons which are available here: https://github.com/google/material-design-icons

            Unfortunately this repo does not get any updates any more. Last commit is from January 2018.

            There are several forks, but AFAIK none got the "Bandwagon effect".

            Where can I get supported material design icons?

            ...

            ANSWER

            Answered 2019-Jul-31 at 08:09

            QUESTION

            Micro-services architecture loose coupling complications
            Asked 2019-Jun-19 at 11:51

            I'm fairly new to the whole micro-services bandwagon. I have been doing some research into the architecture and principles behind a good micro-services environment.

            One of the main things that defines a micro-service is supposed to be the loosely coupled nature of each service. Micro Service A should never call Micro Service B directly, or you're effectively creating a monolithic system that looses the scalability offered by the architecture pattern.

            Question / example

            If I develop a micro-service that returns a GUID (for example), it's reasonable to suggest that other micro-services in the environment might call the GUID service directly when one is required.

            I understand that a variety of queuing systems can be used to pass data from one service to the next, but in my mind they're for inserting, deleting or updating primarily.

            I can't get my head round how a queue would be used for a simple read (like my GUID example) and why you wouldn't just call the GUID service directly from another micro-service.

            Note: Returning a GUID is just an example, I'm aware most languages are able to generate them internally

            Some clarity on this would be much appreciated.

            ...

            ANSWER

            Answered 2019-Jun-19 at 11:51

            You should not follow every rule as it is.

            There are many exceptions to this rule and the practices of lot of systems has proven it not to be correct for every case or system.

            I disagree with this restriction that micro-service A should never call micro-service B as a general rule as it does not apply to all cases. I have worked with multiple systems using micro-services and we where not following that.

            Communication between micro-services:

            You can use multiple ways to communicate between micro-services like:

            1. Events (using queue)

            2. Commands - direct call over API to another micro-service (which is some kind of instruction to the micro-service) which requires a change to happen(Create, Update, Delete).

            3. Queries - direct call over API to another micro-service (like your example of getting GUID). Again some people will say that this is a Command as well. Using Query as term is often combined while you use CQRS as well.

            4. Shared Db's (most of the online resources will tell you not to do this for multiple reasons) In general this is not recommended approach.

            In general

            You should work with your system based on your needs and not based on set in stone rules like "Micro Service A should never call Micro Service B".

            I will give you an example why:

            Example:

            Lets say you have "micro-service A" and "micro-service B". Your "micro-service B" is consuming events which "micro-service A" publishes through Kafka. "Micro-service B" when consuming the events is storing some relevant "External" data in its own database(duplicating it). This is common approach not to call the "micro-service A" each time you need some of its data. This is common for example if "micro-service A" is some service having the system configuration settings or similar.

            Lets say you have scenario of disaster where your database and all the data from your "micro-service B" is destroyed or corrupted. In order to solve the problem you could just restore your backup and apply the apply latest events from lets say last 1h where your "micro-service B" was down and solve the problem(If your event handling is implemented to be Idempotent). All good in this case.

            On the other hand if you have a system running for a while on production. After some point you develop "micro-service C" and decide to deploy it to production. It turns out that you need some data that "micro-service A" produces. You need that data on your "micro-service C" as External data similar as you had it with "micro-service B". How do you get that data? You consume all the events from "micro-service A"? In ideal world you would keep all the events in Kafka forever. In this case you would just subscribe for events and apply all of them to save all the data you need in "micro-service C". In reality you need to set some Retention Period to your Kafka for lets say 5 days. If you have a system running longer then 5 days you can not recreate your data from events.

            In this case you need to call the service directly with Command/Query and populate the "micro-service C" database.

            This is just one edge case example for which you will need to have a direct call.

            Summary:

            There are many other examples where this approach is valid as well. Very often you will for example need to call another micro-service synchronously and you will want to wait for the response(depending of your business scenario). The best way to do this is calling another micro-service directly with a Command/Query.

            Source https://stackoverflow.com/questions/56649230

            QUESTION

            Does tf.estimator.Estimator.train() maintain input_fn state
            Asked 2019-May-07 at 16:27

            I have been using my own Estimator/Experiment like code for over a year, but I want to finally jump on the Dataset+Estimator bandwagon.

            I would like to do something like the following:

            ...

            ANSWER

            Answered 2017-Oct-31 at 19:41

            As I mentioned in my comment above, it looks like it does not save state across calls to estimator.train().

            A solution that I am going with, and possibly the intended method, is to pass evaluation listeners to estimator.train(). For example,

            Source https://stackoverflow.com/questions/46925196

            QUESTION

            VS Code & PHP: No Autocomplete for variables from included files?
            Asked 2019-Mar-29 at 11:19

            I have just jumped on the Visual Studio Code bandwagon, but have hit my first deal-breaker: I can't get it to autocomplete variables that I've set inside of an included "config.php" file, where I would set variables like:

            ...

            ANSWER

            Answered 2019-Mar-29 at 11:19

            OK, so I've been poking around at this off and on for a while...

            I've found one extension "PHP Tools for VS Code, by DEVSENSE" it somehow makes this functionality work...however it is a paid extension $179 setup, and $98/year after that (for individuals it's $79, then $49 renew).

            BUT, that tells me it is possible with VS Code...

            I've been using Dreamweaver for over a decade, and got used to this functionality - but I've moved to Linux, which Adobe doesn't play nice with...and besides, I hate the idea of recurring billing for software I buy - if they make something new and amazing, I'll buy it...but in my estimation DW hasn't had any innovation for a few years; so I'm happy to fire Adobe (and found VS Code - which is pretty awesome).

            Anyways, I guess what irks me; my basic text editor "Xed" (that comes installed with XFCE) has this ability, along with Vi (and derivatives), Geany and Bluefish...and obviously phpstorm and the like...probably a ton of others I haven't tried.

            Bottom line; really seems like basic functionality that should work out of the box...and with all the other truly INSANE capabilities of VS Code, I'm shocked there isn't a simple way to make it happen (extension or otherwise); I hope the right person sees this and does something about it ;)

            I don't want to seem ungrateful here, this VS Code initiative and the community around it is really amazing - and I am going to continue using it, at least for the intermediate term...

            My "band-aid fix": I have just created a few user snippets based on my dozen or so most common variables that I would have in a config file eg:

            Source https://stackoverflow.com/questions/55044530

            QUESTION

            I want to modualrise code using javascript
            Asked 2017-Oct-21 at 15:12

            I have one file in which there is lot of code in one function. Say that function name is MessageHandler and in that function there is lot of if else condition and code to be executed after condition is true. The problem is i want to modularised that code using javascript so that it would be maintainable and also it would be easy to find bugs. May be creating different files for every logic.What is the best approach

            Part of the Code:

            ...

            ANSWER

            Answered 2017-Oct-21 at 15:12

            You could use patterns like a module. Do your code more legible, like a history, put each piece of code in one function and keep these functions in files where make sense be there, and when you need help calling as follow:

            Source https://stackoverflow.com/questions/46864540

            QUESTION

            .zshrc not sourced in tmux loaded in Intellij
            Asked 2017-Oct-11 at 19:53

            So I'm encountering some very weird behavior which I cannot explain. I recently hopped on the tmux bandwagon and set up my shell configuration to automatically launch tmux when I open a terminal window. Around the same time, I started getting a bug, where opening a new terminal session would correctly launch tmux but then display:

            ...

            ANSWER

            Answered 2017-Oct-11 at 19:53

            Based on https://youtrack.jetbrains.com/issue/IDEA-165272, in Intellij, unchecking Settings > Tools > Terminal > Shell Integration fixed this issue for me.

            I have no idea what that setting actually does and can't find any documentation on it, but disabling it solves the problem.

            Thanks CrazyCoder, you're a life-saver!

            Source https://stackoverflow.com/questions/46695785

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install BandWagon

            You can install using 'pip install BandWagon' or download it from GitHub, PyPI.
            You can use BandWagon like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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