cy-rest-R | Example R script to use Cytoscape via RESTful API module

by idekerlab HTML Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | cy-rest-R Summary

cy-rest-R is a HTML library. cy-rest-R has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

This is a collection of R workflows to use Cytoscaep from R via cyREST app.

Support

Quality

Security

License

Reuse

Support

cy-rest-R has a low active ecosystem.

It has 23 star(s) with 12 fork(s). There are 18 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 1 have been closed. On average issues are closed in 9 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of cy-rest-R is current.

Quality

cy-rest-R has 0 bugs and 0 code smells.

Security

cy-rest-R has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cy-rest-R code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cy-rest-R is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cy-rest-R releases are not available. You will need to build from source code and install.

Installation instructions are available. Examples and code snippets are not available.

It has 1000 lines of code, 0 functions and 3 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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cy-rest-R Key Features

No Key Features are available at this moment for cy-rest-R.

cy-rest-R Examples and Code Snippets

No Code Snippets are available at this moment for cy-rest-R.

Community Discussions

No Community Discussions are available at this moment for cy-rest-R.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cy-rest-R

In addition to main workflows, there are some small tutorials in rmarkdown directory. I recommend to try them first.
Install all required software
Start Cytoscape
Open web browser and visit cyREST page in App Store
Click Install button to directly install the App from this page Note: Do NOT install app from App menu. It installs older version of cyREST. This is a known bug in Cytoscape.
Clone this repository
Open the directory with RStudio
Run r_markdown/basic1.Rmd to start basic workflow
Overview
Working with igraph and Cytoscape
More igraph and Visual Styles