cyREST | Please visit our new repository | Genomics library

by idekerlab Java Version: 1.1.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | cyREST Summary

cyREST is a Java library typically used in Artificial Intelligence, Genomics applications. cyREST has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

DEPRECATED. Please visit our new repository (cytoscape/cyREST)

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Quality

Security

License

Reuse

Support

cyREST has a low active ecosystem.

It has 28 star(s) with 25 fork(s). There are 13 watchers for this library.

It had no major release in the last 12 months.

There are 17 open issues and 24 have been closed. On average issues are closed in 45 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of cyREST is 1.1.0

Quality

cyREST has 0 bugs and 0 code smells.

Security

cyREST has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cyREST code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cyREST is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cyREST releases are available to install and integrate.

Build file is available. You can build the component from source.

cyREST saves you 4059 person hours of effort in developing the same functionality from scratch.

It has 8629 lines of code, 508 functions and 85 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed cyREST and discovered the below as its top functions. This is intended to give you an instant insight into cyREST implemented functionality, and help decide if they suit your requirements.

Create a new network
Add network
Loads a network
Generates the JSON string for network load results
Starts the bundle manager
Starts listening REST service
Update layout parameters
Converts a JsonNode value into an object of the specified type
Serialize CyRow
Writes a value to the JsonGenerator
Gets a custom style
Get a list of network UIDs
Update a mapping
Gets the value of a visual property
Serialize CyTable
Apply a visual style to a network
Add new edges to a network
Serializes the CyGroup
Update nodes view
Create a subnetwork from a network
Apply a layout to a network
Add new nodes to a network
Serialize to JSON string
Gets the value of a cell
Update CytoPanel state
Update a single node view

Get all kandi verified functions for this library.

cyREST Key Features

No Key Features are available at this moment for cyREST.

cyREST Examples and Code Snippets

No Code Snippets are available at this moment for cyREST.

Community Discussions

Trending Discussions on cyREST

How do I install Cytoscape on Google Colab?

Cytoscape - Set nodeCustomGraphicsSizeSync and nodeSizeLocked from CyREST

QUESTION

How do I install Cytoscape on Google Colab?

Asked 2020-Sep-11 at 23:04

I'd like to use Cytoscape.js (https://js.cytoscape.org/) on Google Colab. I found here (https://py2cytoscape.readthedocs.io/en/latest/) that this can be done in Jupyter Notebooks, but the documentation isn't very thorough.

Here is the code I ran to try to set up Cytoscape and CyREST (paste each block of code here into a separate cell in Google Colab):

...

ANSWER

Answered 2020-Sep-11 at 23:04

For anyone else who runs into this issue, I learned that instead of using this approach, an easier one is to use ipycytoscape, which makes it much easier to get everything running.

However, the problem with both this approach and the one I described in the question is that Cytoscape relies on some ipywidgets for output, and these aren't supported in Google Colab yet.

You can follow the progress of this issue here: https://github.com/googlecolab/colabtools/issues/60

Source https://stackoverflow.com/questions/62421021

QUESTION

Cytoscape - Set nodeCustomGraphicsSizeSync and nodeSizeLocked from CyREST

Asked 2020-Jan-16 at 16:19

Is there a way to programatically set nodeCustomGraphicsSizeSync and nodeSizeLocked in Cytoscape with the CyRest api ?

They are usually set in the UI by the two checkboxes "Fit Custom Graphics to node" and "Lock node width and height" (see image).

I tried this, which does not work:

...

ANSWER

Answered 2020-Jan-16 at 16:19

There is a way in CyREST, but I'm not sure it's been made available through py2cytoscape. Basically, you need to update the dependencies, which is a different REST endpoint (/{name}/dependencies) and you want to use "enabled" rather than "true". You may want to see if there is an update_dependencies in py2cytoscape (I don't see one after a quick look at the docs). If not, add an issue in github: https://github.com/cytoscape/py2cytoscape

-- scooter

Source https://stackoverflow.com/questions/59756877

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cyREST

You can download it from GitHub.
You can use cyREST like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the cyREST component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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