kingaa.github.io | Aaron A. King - | Machine Learning library

by kingaa HTML Version: Current License: No License

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kandi X-RAY | kingaa.github.io Summary

kingaa.github.io is a HTML library typically used in Artificial Intelligence, Machine Learning applications. kingaa.github.io has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Aaron A. King

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kingaa.github.io has a low active ecosystem.

It has 6 star(s) with 0 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

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It has a neutral sentiment in the developer community.

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kingaa.github.io has 0 bugs and 0 code smells.

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It has 62137 lines of code, 0 functions and 1316 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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Community Discussions

Trending Discussions on kingaa.github.io

R function loglik() returning -inf?

pomp package COVID SEIR model least squares errors traceback

QUESTION

R function loglik() returning -inf?

Asked 2021-Jan-03 at 22:31

Simulating an SIR model in R. I have a data set I am trying to plot accurately with the model. I am right now using the particle filter function, then would like to use the corresponding logLik method on the result. When I do this, I get "[1] -Inf" as a result. I can't find in the documentation why this is and how I can avoid it. Are my parameters for the model not accurate enough? Is there something else wrong?

My function looks like this: SIRsim %>% pfilter(Np=5000) -> pf logLik(pf)

From an online course lesson entitled Likelihood for POMPS https://kingaa.github.io/sbied/pfilter/ , this is the R script for the lesson. However, the code works here... I'm not sure how to reproduce my specific problem with it and unfortunately cannot share the dataset or code I am using because it is for academic research.

...

ANSWER

Answered 2021-Jan-03 at 22:31

If I set Beta=100 in the code above I can get a negative-infinite log-likelihood.

Replacing the measurement-error snippet with this:

Source https://stackoverflow.com/questions/65554258

QUESTION

pomp package COVID SEIR model least squares errors traceback

Asked 2020-Dec-07 at 12:23

I try to model a SEIR for UK to evaluate the implemented containment measures and found some code with the pomp package here: https://kingaa.github.io/clim-dis/parest/parest.html I tried to transfer this to my case which adds one stage (E) and three more variables. In the end i want to do a least squared estimation to find the optimal beta. Data_UK_beta0 consists of the variable date (int from 0 to 165) and new_cases (from John Hopkins University dataset).

...

ANSWER

Answered 2020-Dec-06 at 18:17

The sse function you've imported from apricom has nothing (as far as I can see) to do with this problem. (This also doesn't have anything to do with C(++) code compilation, so the [compiler-errors] tag in your question is a little misleading.)

You haven't given us a way to get your Data_UK_beta0 data set so I can't reproduce this, but I assume that you actually want something like:

Source https://stackoverflow.com/questions/65163452

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