tidygraph | A tidy API for graph manipulation | Data Visualization library

 by   thomasp85 HTML Version: v1.2.0 License: Non-SPDX

kandi X-RAY | tidygraph Summary

kandi X-RAY | tidygraph Summary

tidygraph is a HTML library typically used in Analytics, Data Visualization applications. tidygraph has no bugs, it has no vulnerabilities and it has low support. However tidygraph has a Non-SPDX License. You can download it from GitHub.

tidygraph is a huge package that exports 280 different functions and methods. It more or less wraps the full functionality of igraph in a tidy API giving you access to almost all of the dplyr verbs plus a few more, developed for use with relational data.
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              tidygraph has a low active ecosystem.
              It has 410 star(s) with 40 fork(s). There are 21 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 41 open issues and 78 have been closed. On average issues are closed in 211 days. There are 4 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of tidygraph is v1.2.0

            kandi-Quality Quality

              tidygraph has no bugs reported.

            kandi-Security Security

              tidygraph has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              tidygraph has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              tidygraph releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            tidygraph Key Features

            No Key Features are available at this moment for tidygraph.

            tidygraph Examples and Code Snippets

            No Code Snippets are available at this moment for tidygraph.

            Community Discussions

            QUESTION

            Applying particles package in R to ocean velocity
            Asked 2021-Jun-12 at 16:03

            I am trying to apply an example from R "particles" package to ocean velocity data (kinetic energy). Example data is as follows:

            ...

            ANSWER

            Answered 2021-Jun-12 at 14:45

            The problem is that kee is a vector and not a matrix. So ncol and nrow return as NULL instead of an actual number. Here is a smaller reproducible example of why it is failing:

            Source https://stackoverflow.com/questions/67949397

            QUESTION

            Count edges of a given type for each node with tidygraph
            Asked 2021-Jun-01 at 06:59

            Objective: I want to count the number of incoming edges of a partial type for each node. How can I do that?

            Criteria:

            • I need to use the R package tidygraph
            • Answers that allow me to mutate an existing graph via a magrittr pipeline are better
            • Fewer lines of code are better

            The following code will generate an example graph

            ...

            ANSWER

            Answered 2021-May-30 at 03:22

            This will produce output consistent with the request

            Source https://stackoverflow.com/questions/67695156

            QUESTION

            plot ggraph using supplied node coordinates
            Asked 2021-May-30 at 21:16

            As the title says. I have a graph object created using igraph::sample_grg(), which I want to plot using ggraph, with nodes positioned according to the node attributes x and y. What I have tried:

            Create graph:

            ...

            ANSWER

            Answered 2021-May-30 at 21:16

            Since you have enabled coords = TRUE when generating g, the layout coordinates names have been given as x and y.

            To avoid collision, you should name layout l1 with different column names, e.g., lx or ly,

            Source https://stackoverflow.com/questions/67756538

            QUESTION

            Finding the cumulative sum of the value of nodes in a DAG
            Asked 2021-May-19 at 20:14

            Suppose I have the following directed acyclic graph (DAG) with each node having a weight of 1.

            I am interested in calculating the accumulated sum of each node based on the value of its ancestor. Assuming as I said earlier that the weight of each node is 1, then this is what I would expect to get

            This is what I tried to do:

            ...

            ANSWER

            Answered 2021-May-19 at 20:14

            Here is an igraph option using distance with argument mode = "in"

            • If your nodes are unweighted, i.e., revenue=1 for all nodes

            Source https://stackoverflow.com/questions/67528697

            QUESTION

            Automating a loop in igraph using tidygraph
            Asked 2021-May-11 at 06:52

            Hello and hope all goes well. I made an edit to my previous question and hope it makes it more clear.

            I created an igraph object and would like to run same analysis several times and extract some information in each iteration.

            I can't share the whole data, so I am sharing just a small subset. df_edge is as follows:

            ...

            ANSWER

            Answered 2021-May-11 at 06:52

            Does this work for you?

            Source https://stackoverflow.com/questions/67439359

            QUESTION

            R ggraph: Decrease distance between nodes
            Asked 2021-Apr-07 at 17:42

            I'm creating a sample ego network plot, but I'd like the nodes to be closer together, specifically, the alter nodes closer to the ego node. My code:

            ...

            ANSWER

            Answered 2021-Apr-07 at 17:42

            I was able to shorten the distance by changing the x and y axis limits:

            Source https://stackoverflow.com/questions/66955054

            QUESTION

            ggraph use fill and color in geom_node_point
            Asked 2021-Apr-05 at 08:30

            I'm trying to make a sample ego network plot, but coloring the nodes using "fill" isn't working for me. This may be a trivial issue, but I can't figure out the problem. This is my code:

            ...

            ANSWER

            Answered 2021-Apr-05 at 08:30

            Update

            With the input of tjebo (Many thanks!) the solution for ("...and to have a black outline around each node") could be:

            • Change this line

            geom_node_point(aes(fill = factor(label)), size = 7, color = "black") +

            • to

            geom_node_point(aes(fill = factor(label)), shape = 21, size = 7, color = "black") +

            Output

            First try

            Change: geom_node_point(aes(fill = factor(label)), size = 7, color = "black") + to geom_node_point(aes(color = factor(label)), size = 7) +

            Source https://stackoverflow.com/questions/66948228

            QUESTION

            Remove isolated nodes from dynamic layout in ggraph plot
            Asked 2021-Mar-29 at 17:32

            I have a friendship network dataset over several waves. I want to plot the friendships that persist over the waves, and keep the nodes in the same coordinates for each plot. I'm able to use ggraph and graphlayouts' dynamic layout to keep the nodes in the same positions over four waves, but I want to remove the nodes over time that lose their ties. This is an example of what I have done so far:

            ...

            ANSWER

            Answered 2021-Mar-29 at 17:32

            I think you can do something like below within your for loop

            Source https://stackoverflow.com/questions/66821279

            QUESTION

            R: getting igraph atributes to an edge id: slow runtime. Is there a way to make it faster?
            Asked 2021-Mar-28 at 04:13

            Im calculating the shortest path between 2 points in sfnetwork my_sfn.

            The calculated path consists of graph ids kept in variable paths and I and would like to get geometry (gps values) connected to those ids.

            which is done with:

            ...

            ANSWER

            Answered 2021-Mar-26 at 21:21

            I solved it by using the index in the last column in data.frame as index for the paths vector

            Source https://stackoverflow.com/questions/66823082

            QUESTION

            Assign a unique ID to the points based on row-wise difference in R dataframe
            Asked 2021-Feb-20 at 21:27

            I want to assign unique IDs say 1,2, 3, …,n for the points in R dataframe dt. Starting from the first row a point is assigned ID 1 if the row-wise difference of x or y or both is <10. The point continuously gets ID 1 until there is a gap in Date and the difference in x or y or both is <10. So A single ID is assigned for a point for all the days until either (i) there is a gap in Date and/or (ii) the row-wise difference of x or y or both is <10. I expect output like in expectedid column in the dt or like in this plot.

            Or the other way to achieve what I want is to subset all the points from dt that has <10 difference in row-wise x or y or both and no gaps in the date, assign/write them as a set of dataframe and continue for next set and so on.

            ...

            ANSWER

            Answered 2021-Feb-18 at 22:45

            This seems to me like a network problem, since we are trying to identify links between observations on subsequent days which are sufficiently close, and to use those links to establish "membership" with a given ID.

            Edited to reflect suggestion from @pseudospin to use group_components() instead of group_fast_greedy(). It now correctly attributes each entity to a consistent group. The raw output of that algorithm doesn't label the groups in the same order, but we can fix that downstream, as shown below.

            First, let's add a row number to the original data to help for tracking

            Source https://stackoverflow.com/questions/66245765

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install tidygraph

            tidygraph is available on CRAN and can be installed simply, using install.packages('tidygraph'). For the development version available on GitHub, use the devtools package for installation:.

            Support

            While tidygraph is powered by igraph underneath it wants everyone to join the fun. The as_tbl_graph() function can easily convert relational data from all your favourite objects, such as network, phylo, dendrogram, data.tree, graph, etc. More conversion will be added in the order I become aware of them.
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            gh repo clone thomasp85/tidygraph

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