treemachine | Source tree graph database

by OpenTreeOfLife Java Version: Current License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | treemachine Summary

treemachine is a Java library. treemachine has no bugs, it has no vulnerabilities, it has build file available and it has low support. However treemachine has a Non-SPDX License. You can download it from GitHub.

treemachine-LITE is a pared-down version of the original treemachine which was used to generate synthetic phylogenetic trees for the Open Tree of Life project. Synthetic analyses are now performed by other tools. The role of treemachine-LITE is simply to construct a neo4j database and serve such trees.

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Quality

Security

License

Reuse

Support

treemachine has a low active ecosystem.

It has 17 star(s) with 6 fork(s). There are 18 watchers for this library.

It had no major release in the last 6 months.

There are 15 open issues and 173 have been closed. On average issues are closed in 437 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of treemachine is current.

Quality

treemachine has 0 bugs and 0 code smells.

Security

treemachine has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

treemachine code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

treemachine has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

treemachine releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

treemachine saves you 2870 person hours of effort in developing the same functionality from scratch.

It has 6203 lines of code, 330 functions and 56 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed treemachine and discovered the below as its top functions. This is intended to give you an instant insight into treemachine implemented functionality, and help decide if they suit your requirements.

This method is used to serialize the taxonomy into a JSON string
Returns the JSON representation of the tree rooted at this node
Returns a list of all the tips of this node
Returns the maximum number of edges of this node
Starts the tree loading process
Adds metadata for the root node
Recursively adds the descendants of a JadeNode
Returns the node that matches the specified leaves
Returns the longest common ancestor of the specified strings
Returns information about the tree of the tree
Prunes a node from its external nodes
Prints indentation level
Throw exception when multiple bad node ids are not found
Dumps all of the relationships in a CSV file
Roots a tree
Main entry point for testing
Returns the current node in the tree
Provides information about a specific node in the graph
Read taxonomy data from a file
Builds the JadeTree for the given startNode
Read the taxonomy from a file
Constructs a list of altels
Command - line tool
Remove the synthetic tree from the graph
Return the description of the draft tree
Returns the MRCA representation of the given set of nodes

Get all kandi verified functions for this library.

treemachine Key Features

No Key Features are available at this moment for treemachine.

treemachine Examples and Code Snippets

No Code Snippets are available at this moment for treemachine.

Community Discussions

No Community Discussions are available at this moment for treemachine.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install treemachine

You can download it from GitHub.
You can use treemachine like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the treemachine component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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