opentree | Opentree browsing and curation web site | Continuous Deployment library

 by   OpenTreeOfLife JavaScript Version: Current License: BSD-2-Clause

kandi X-RAY | opentree Summary

kandi X-RAY | opentree Summary

opentree is a JavaScript library typically used in Devops, Continuous Deployment, Docker applications. opentree has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.
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            kandi-support Support

              opentree has a low active ecosystem.
              It has 106 star(s) with 25 fork(s). There are 19 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 279 open issues and 424 have been closed. On average issues are closed in 291 days. There are 9 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of opentree is current.

            kandi-Quality Quality

              opentree has 0 bugs and 0 code smells.

            kandi-Security Security

              opentree has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              opentree code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              opentree is licensed under the BSD-2-Clause License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              opentree releases are not available. You will need to build from source code and install.
              Installation instructions, examples and code snippets are available.
              opentree saves you 25115 person hours of effort in developing the same functionality from scratch.
              It has 50085 lines of code, 431 functions and 338 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

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            opentree Key Features

            No Key Features are available at this moment for opentree.

            opentree Examples and Code Snippets

            No Code Snippets are available at this moment for opentree.

            Community Discussions

            QUESTION

            The "Haskell way" to extract/cumulate results inside an predefined vistor pattern iterator
            Asked 2021-Jun-30 at 13:02

            I'm getting started with Haskell (from many years of C and c++) and have decided to attempt a small database project. I'm using a predefined binder library to a C database library (Database.kyotocabint). I'm struggling to get my head round how to do anything with the iterator interfaces due to the separation of effects when using a pre-defined method.

            The toy demo to iterate over the data base and print it out (which works fine) is

            ...

            ANSWER

            Answered 2021-Jun-30 at 12:16

            The kyotocabinet library unfortunately does not seem to support your operation. Beyond iterate, it should expose some similar operation which returns something more complex than IO (), say IO a or IO [a] while requiring a more complex visitor function.

            Still, since we work inside IO, there is a workaround: we can exploit IORefs and collect results. I want to stress, though, that this is not idiomatic code one would write in Haskell, but something one is forced to use because if the limitation of this library.

            Anyway, the code would look something like this (untested):

            Source https://stackoverflow.com/questions/68193561

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install opentree

            See the phylografter instructions for more details about using web2py. We strongly recommend using a virtual environment to manage the version of Python and installed modules. We’re currently running opentree with Python v2.7.3. Newer versions of python2.7 should work, but NOTE that web2py is not compatible with Python 3. If necessary, compile Python2.7 and use it when making your virtualenv. You should be able to safely install multiple versions of python using your preferred package manager, or by configuring Python2.7 with the --prefix option and make altinstall.
            Download and unpack the source code version of web2py from http://www.web2py.com/examples/default/download MTH used version 2.4.2 of web2py NOTE: This version of web2py includes basic support for OAuth 2.0, but it needs a minor patch to support for login via the GitHub API v3. (The curation app uses GitHub for its datastore and attribution. The tree browser also uses it for its issue tracker, with optional authentication for convenience.) Replace this web2py file with a modified version in the same folder as this README: <pre> {web2py-2.4.4}/gluon/contrib/login_methods/oauth20_account.py </pre>
            Create the sym links for the main web app and the study curation tool. <pre> cd web2py/applications ln -s /full/path/to/opentree/webapp opentree ln -s /full/path/to/opentree/curator curator </pre>
            Customize web2py’s site-wide routing behavior using "SITE.routes.py" <pre> # return to main web2py directory cd .. cp /full/path/to/opentree/SITE.routes.py routes.py </pre> This routing file works in tandem with the opentree app router and lets us have proper URLs with hyphens instead of underscores.
            Launch web2py <pre> cd /full/path/to/web2py python web2py.py --nogui -a '&lt;recycle&gt;' </pre> Where the -a flag is allowing you to reuse the previous admin password that you used with this instance of web2py. **To test with login and proper domain name**, modify your test system's `/etc/hosts` file (or equivalent) to resolve the domain `devtree.opentreeoflife.org` to localhost (127.0.0.1). Then run web2py on (privileged) port 80 like so: <pre> cd /full/path/to/web2py sudo python web2py.py --nogui -p 80 -a '&lt;recycle&gt;' </pre> **To test with local HTTPS**, modify your test system's `/etc/hosts` file as described above, then use a [web2py options file]() to support HTTP traffic on port 80 and HTTPS on port 443. This requires working key and cert files. to localhost (127.0.0.1). Then run web2py on (privileged) port 80 like so: <pre> cd /full/path/to/web2py sudo python web2py.py --verbose -L multiport_options.py </pre> This looks for the options file `multiport_options.py` in the same directory as `web2py.py`, with contents something like this: <pre> import os interfaces = [( '0.0.0.0', 80 ), ( '0.0.0.0', 443, '/Volumes/SecureFiles/.ssh/opentree/ssl-keys/opentreeoflife.org.key', '/Volumes/SecureFiles/.ssh/opentree/ssl-keys/STAR_opentreeoflife_org.crt' )] password = '<recycle>' pid_filename = 'httpserver.pid' log_filename = 'httpserver.log' folder = os.getcwd() </pre> Now you should be able to use production domain names, secure connections, and OAuth as in the production setup.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/OpenTreeOfLife/opentree.git

          • CLI

            gh repo clone OpenTreeOfLife/opentree

          • sshUrl

            git@github.com:OpenTreeOfLife/opentree.git

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