Leucippus | mosaic variants from targeted sequencing
kandi X-RAY | Leucippus Summary
kandi X-RAY | Leucippus Summary
Leucippus is a Java library. Leucippus has no bugs, it has no vulnerabilities and it has low support. However Leucippus build file is not available and it has a Non-SPDX License. You can download it from GitHub.
Constructs long reads -construction of long read by sliding paired reads and then choosing the long read with the best matching window. (the sliding is performed from left to right and from right to left(the paired reads are in fastq format, thus one read must be reversed and complemented before the sliding process).
Constructs long reads -construction of long read by sliding paired reads and then choosing the long read with the best matching window. (the sliding is performed from left to right and from right to left(the paired reads are in fastq format, thus one read must be reversed and complemented before the sliding process).
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Quality
Security
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Support
Leucippus has a low active ecosystem.
It has 3 star(s) with 1 fork(s). There are 2 watchers for this library.
It had no major release in the last 6 months.
Leucippus has no issues reported. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of Leucippus is current.
Quality
Leucippus has no bugs reported.
Security
Leucippus has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
License
Leucippus has a Non-SPDX License.
Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.
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Leucippus releases are not available. You will need to build from source code and install.
Leucippus has no build file. You will be need to create the build yourself to build the component from source.
Installation instructions are not available. Examples and code snippets are available.
Top functions reviewed by kandi - BETA
kandi has reviewed Leucippus and discovered the below as its top functions. This is intended to give you an instant insight into Leucippus implemented functionality, and help decide if they suit your requirements.
- This method creates a vector for the initial site intervals
- This method creates a table for reading from the BAM file
- Get Indel info
- Prepares a vector of data and returns a vector with the data
- Makes an example of two reads
- Restores the B2 coefficients from a file
- Choose baseCalculate quality
- Make a long read
- This method is used to validate user input arguments
- Test if the output directory exists
- Main method for testing
- Writes the elements of a String vector to a file
- Retrieves a vector of nms from a data path
- List all files within a folder
- Get the fractional percentimath from a vector
- Get the first unique part of a read name
- Returns the name of the read
- Get the type
- This method is used to show the read and quality information
- Method to get the mmirrored alt - ref
- Method to retrieve the mmirrored salt
- Returns a vector containing the names of the intervals in sorted order
- Main routine for testing only
- Method to process overlapping sites
- Convert an FASTQ read name into a unique part name
Get all kandi verified functions for this library.
Leucippus Key Features
No Key Features are available at this moment for Leucippus.
Leucippus Examples and Code Snippets
No Code Snippets are available at this moment for Leucippus.
Community Discussions
Trending Discussions on Leucippus
QUESTION
How do you get a different name to pop up when you click the button?
Asked 2021-May-11 at 12:44
I'm pretty new working on python and this is my first "big" project. This is what I have worked on for the day. I am trying to work on this project that randomly generates a name when you click on a category and press the generate button. It randomly generates one name but when I press the generate button again it doesn't display another name. That's what I'm trying to figure out. Also if anyone doesn't mind, how can I check a box and generate a name on that category.
Thank you very much
...ANSWER
Answered 2021-May-11 at 12:44Your name choices are more naturally organized as Radiobutton widgets.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install Leucippus
You can download it from GitHub.
You can use Leucippus like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the Leucippus component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
You can use Leucippus like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the Leucippus component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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