All2 | filtering variants from all2all comparison | Genomics library
kandi X-RAY | All2 Summary
kandi X-RAY | All2 Summary
A tool for filtering variants from all2all comparison of multiple clones or single cells.
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Top functions reviewed by kandi - BETA
- Extract mutation information from a manifest file .
- Generate an explanation for an explanation .
- Extract mutation information from a VCF file .
- Validate a file
- Validates that a directory exists .
- Ensures that f exists .
All2 Key Features
All2 Examples and Code Snippets
Community Discussions
Trending Discussions on All2
QUESTION
I have two quote dictionaries I'm trying to append after an in-app purchase. I have tried several different methods to append the dictionaries together but I'm still getting an error "No exact matches in call to instance method 'append'"
I have established variables for each array to then append the array within the struct.
Any thoughts? Is there a better method I should use to add the quotes from the array called QuoteDetails2 to the initial array QuoteDetails?
...ANSWER
Answered 2022-Mar-02 at 03:36This should be a comment but it would be a bit tricky to explain what Koropok & Leo Dabus were saying without the formatting.
You have two arrays:
QUESTION
I have simple Makefile
below. That runs clear when using default target all
.
ANSWER
Answered 2022-Feb-18 at 19:15The reason is that make has a built-in rule that knows how to build a binary file from an object file that has the same prefix; that is, given a binary file foo
make has a built-in rule that knows how to build it from foo.o
.
You have a target all2
and normally that doesn't matter because you don't have an all2.c
and so make can't find a way to build all2.o
and so it decides there's no rule to build all2
.
But in your makefile, you've created a rule to build any .c
file, so when make tries to find a way to build all2.o
it discovers it can be built from all2.c
and there is a rule to build all2.c
, so the rule matches.
Of course, you won't have a rule like %.c : ; touch $@
in your non-test makefile so you won't see this problem in any real makefile.
If you want to make this work for your test environment you can, as @Cheatah says, declare the all2
rule to be phony which will prevent make from trying to look up any rules to build it.
QUESTION
I'm trying to reorder the bars on my bargraph so they are biggest to smallest, ordered by log(Max_N) rather than alphabetically. I've tried using forcats but it brings up an error message. This is my code so far, whats going wrong? I'm trying to teach myself how to use ggplot, so please do point out any errors I've made, because I am self-taught!
...ANSWER
Answered 2022-Feb-14 at 07:22Acutally if I were you, I will just have a reorder
inside ggplot(aes())
, then you don't need to change anything in your data.
If you want to plot this bar chart that sum up all Max_N
within a species, you can do a group_by
and summarise
before piping into ggplot
. This will NOT change your original all
dataframe.
QUESTION
I want to get data from this json url.
https://viabilita.autostrade.it/traffico-fasce-orarie-cantieri-liguria/all2.json
This data is used from this page:
https://viabilita.autostrade.it/traffico-fasce-orarie-cantieri-liguria/index.html
...ANSWER
Answered 2022-Jan-25 at 14:21Per default HttpClient
won't send any User-Agent and this will make quite a few sites suspious. I tried the same request without setting an User-Agent header and it returned an HTML document instead.
So you need to add a User-Agent
header and it will probably work (and to be a good sport, add a user-agent that identifies your application).
QUESTION
I have JSON model,
...ANSWER
Answered 2021-Aug-19 at 21:07I think that is a map of defined objects, but every legend is undefined
QUESTION
Updated below
I have a 1000 row and 780 column data frame in the following format -
E1 P1 All1 E2 P2 All2 100 200 999 300 400 888 5 6 7 8 9 10 11 12 13 14 15 16I have to divide every row value (row 2-1000) in E1, P1 and All1 by first row of All1; E2, P2 and All2 by first row of All2 and so on.
The result that I need is (table values only for illustration, i need the actual values) -
E1 P1 All1 E2 P2 All2 5/999 6/999 7/999 8/888 9/888 10/888 11/999 12/999 13/999 14/888 15/888 16/888What function can be used or how to make a loop for this problem?
Update on the format of data frame
Column names are in the following pattern -
Origin_Destination_Airline_Class
for example : NYC_LAX_AA_E
All combinations of Origin_Destination_Airline have 3 columns each for the classes (E, P, All).
Updated table format
NYC_LAX_AA_E NYC_LAX_AA_P NYC_LAX_AA_All DNW_SFO_DL_E DNW_SFO_DL_P DNW_SFO_DL_All 100 200 999 300 400 888 5 6 7 8 9 10 11 12 13 14 15 16Result needed:
NYC_LAX_AA_E NYC_LAX_AA_P NYC_LAX_AA_All DNW_SFO_DL_E DNW_SFO_DL_P DNW_SFO_DL_All 5/999 6/999 7/999 8/888 9/888 10/888 11/999 12/999 13/999 14/888 15/888 16/888 ...ANSWER
Answered 2021-Jun-20 at 23:49We can use tidyverse
- Loop
across
all the columns (everything()
) insummarise
- Get the column name -
cur_column()
- Replace the substring i.e. all non-digit in the column names with 'All'
- Use
get
to return the value of that column, subset thefirst
-[1]
element - Divide the subset of rows - excluding the first row with 4
QUESTION
If I derive from one or more classes I can inherit the constructors with the using
declaration.
Example:
...ANSWER
Answered 2021-May-16 at 17:02template < typename ... P>
struct All2: public P...
{
using P::P...;
};
QUESTION
I have a mammography image dataset (mini DDSM). These images show letter artifacts indicating left or right mamma and other useless information for my ML model, so I want to curate this dataset before training the model.
In this paper, Preprocessing of Digital Mammogram Image Based on Otsu’s Threshold, they use Otsu's binarization and opening on the mammography to clean the image (page 5 of 10):
So far, I have coded this:
...ANSWER
Answered 2021-Apr-25 at 18:41Here is one way to process your image in Python/OpenCV.
QUESTION
ANSWER
Answered 2021-Feb-06 at 08:20From the issues in react-native-picker, there is a talking about the customizing the selected item inside the picker.
More over, it is not possible to do so at present, as the native properties for the selection indicator styles aren't bridged over yet.
The code inside RNPicker.m file should be modified to handle the customization.
QUESTION
I'm trying to delete specific range based on a time value in the column "J" . So far I got this:
...ANSWER
Answered 2021-Jan-25 at 18:21When you delete the row that contains the range czas
you also delete that range object. A null range has no property .value
which is why you are getting an object required error.
A good way to mass delete range object is to use union
to create non-contiguous ranges and then delete them all at once. This spares you the weirdness of shifting rows in a loop and also will significantly improve speed as deleting is pretty expensive.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install All2
You can use All2 like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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